<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05569

Description Uncharacterized protein
SequenceMQSETNDTSNAAVSSTATPTPTPTAVNAASLNTSLTSNHSNGLASSPSSVTPIAATDSQQSVSGLSGSSVSHSIVTPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQSKMPPLVENQASQDFASVNGSSLQDIEEAKRSLPVVGKNNVVPPEEKTNDDETLVYANKLEAKLAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERLRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKANSHWRKIQDRLEDDDRYLRLEKIDCLLVFQDYIRDLEKEEEEQKRIQKDQIRRGERKNRDAFRKLLEEHVAAGILTAKTQWHEYCLKVRDLPQYQAVASNTSGSTPKDLFEDAAEDLEKQYHEDKTLIKDTIKSGKITVVTTSVFEEFKVAVLEEAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITASSKWEDCKSLFEEAQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKDKSKERHRKDETDSDNQDMTDGHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKQADSPESDNENRHRRHKREHWDGSRKTGGHEELEDGELGDDVEN
Length728
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.246
Instability index53.19
Isoelectric point5.67
Molecular weight84399.40
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05569
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     463.61|      64|      65|     187|     250|       1
---------------------------------------------------------------------------
  133-  183 (38.02/12.52)	.....................LQDIEEAKR..SL..PVVGknnvvppE.EKTNDDETLV.........YANKLEA..............K.LA...............F.KALLES...V
  187-  250 (105.01/46.17)	SDWT....WE.........QAMREIINDKRYNAL..KTLG.......E.RKQAFNEYLG.........QRKKLEAEERRMK.......QK.RAR............EEF.TKMLEE...C
  255-  318 (94.92/41.10)	SSMR....WS.........KAISMFENDERFNAV..ERLR.......D.REDLFESYMV.........ELERKEKENAAEE.......HR.RNI............AEY.RKFLES...C
  323-  395 (77.55/32.37)	ANSH....WR.........KIQDRLEDDDRYLRL..EKI........D.CLLVFQDYIR.........DLEKEEEEQKRIQkdqirrgER.KNR............DAF.RKLLEEhvaA
  396-  481 (50.93/19.00)	GILTaktqWH.........EYCLKVRDLPQYQAVasNTSG.......StPKDLFEDAAE.........DLEKQYHEDKTLI.......KD.TIKsgkitvvttsvfEEFkVAVLEE.aaC
  485-  525 (50.50/18.79)	SEIN....L.........................................KLIFEELL..........ERAK.EKEEKEAK.......KRqRLA............DDF.TNLLYT...F
  530-  594 (46.70/16.88)	ASSK....WEdckslfeeaQEYRS.IGDESYS..................REIFEEYITylkekakekERKR...EEEKAK.......KE.KER............EEK.EK........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     159.02|      30|      30|     635|     664|       2
---------------------------------------------------------------------------
  596-  626 (42.64/20.74)	KEKEKKEKDRERekdK...S...KERHRK...DETDSDNQ
  635-  664 (52.16/27.24)	KEEKKKEKDKER...K...H...RKRHQSSI.DDVDSEKE
  666-  694 (38.03/17.60)	KEESKKS....R...R...HgseRKKSRKQA.DSPESDNE
  698-  727 (26.19/ 9.53)	RRHKREHWDGSR...KtggH...EELEDGELgDDVE....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.70|      28|      30|       3|      30|       3
---------------------------------------------------------------------------
    3-   30 (47.09/28.87)	SETNDTSNAAVS.STATPTP.T.............PTAVNAAS
   34-   59 (37.70/21.91)	SLTSNHSNGLAS.S...PSSvT.............PIAATDSQ
   60-  101 (31.91/17.61)	QSVSGLSGSSVShSIVTPST.TgvepstvvttsaaPTIVAGSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05569 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKDKSKERHRKDETDSDNQDMTDGHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKQADSPESDNENRHRRHKREHWDGSRKTGGHEELEDGELGDDVEN
2) MQSETNDTSNAAVSSTATPTPTPTAVNAASLNTSLTSNHSNGLASSPSSVTPIAATDSQQSVSGLSGSSVSHSIVTPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQSKMPPLVENQASQDF
574
1
728
125










Molecular Recognition Features






MoRF SequenceStartStop




1) NRHRRHKREHWDGSRKTGGHEELEDGELGDDVE
2) SIDDV
695
655
727
659