<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05566

Description Uncharacterized protein
SequenceMQRYHAGSCTSAVNNSAIGGPSTRDIGRTDSSSLPANFPVSSRLGPPDYHPQTPNCPEEILTREYLQSGYRDTVEGLEESREISLTQVQNFSKKVVLNCKEAIRKRLRAINESRVQKRKAGQVYGVALSGSQLAKPGVFPEQRPCPEDFRKKWIEGLSQPHKRLRSLTDLVPHVRRKSLSEVLIRNNVPLLRATWFIKVSYLNVVRPGSASIPSGTADKTQLSCSELWTKDVIEYLQTLLDEFFSKNSSHFTPHNRDRSPQVPYTASFQHRSDQLLSVADGEEPSLHFRWWYIVRLLQWHHAEGLLLPSLIIDWVLRQLQEKQLLEIWQLLLPIVYGFLEIVVLSQTYVRTLAGVALRIIRDPAPGGSDLVDNSRRAYTTSALIEMLRYLIFAAPETFVALDCFPLPSSVVSHTINDGNFVLKATEAAGKIKSSSEDVVCLFRSKGFDAQFQSLAFDHVISCIQECVEDLTKAVSPGYPGQCLAKAAQALDKSLVLGDIHGAYKFLFEDHCDETVSEGWVAKVSHCLRLSLKWFVTVNKSLVYSVFFLCEWATCDFRDFRNAPPCDVKFTGRKDLSHVHIAIRLLKMKLRDMQISPKHKSGSTRGCGVSYLAKCSSQQRNQNFVNNAFKIKSSSRNLDQNICSSAVFESPGPLHDIIVCWIDQHMVHKGEGLKRLHLFIVELIRAGIFYPLAYVRQLIVSGIMDMNVNVVDLERQKRHCRILKQLPGKFVRRALVESGISEGPRLTEALQVYLNERRFILRGSLWENHGNANNVNISSLKQNHCTSSTKDKTSTVSIDPWKSVFSNKTSSKNAKDDNGVEELKTFISTLLQLPKSLSNLSTTGLDESQGSVRKPIGSHNKSDLVEATPGCEECRKAKRQKLSEERSSFVQAPSPILSDDEDTWWVKKGLKSSEHLKVDQPLKPTKQVTKTRQKTVRKTQSLAQLAASRIEGSQGASTSHVCGNKVSCPHHRTAMDGDTTRSVDGIRSGHCEDIVSIGRALKQLRFVERKEVTLWLMTVVRQLIEESEKNVGKVSQFGRPFATVDDKSSIRWKLGEDELSALLYLMDVSDDLVSAVKFLLWLLPKVYSSPNSTIHSGRNALMLPRNVENQACDVGEAFLLSSLRRYENILAAADLLPEALSSIMHRAAAIIASNGRVSGSGALTFACYLLKKYGNVVSVIEWEKSFKSTCDKRLASEIESGRSVDGELGLPLGVPAGVEDPDDFFRQKISGGRLPSRVGSGMRDVVQRNVEEAFRDLFGKDRKLFAAGTPKGPAFEKWDNGYQIAQQIVMSLIDCIRQTGGAAQEGDPSLVTSAVSAIVGSVGPTLAKLPDFSAGSNHSNMSLATSSLNYAKCILRMHITCLCLLKEALGERQSRVFEIALAMEASTALAGVFAPSKASRAQFQMSPETHDTGTISNDVAANNTSKIVVARTTKISAAVSALVVGAIICGVTSLERIVTILRLKEGLDVVHFVRSTRSNSNGNVRSVGAFKLDSSVEVHVHWFRLLVGNCRTICEGLVVDLLGEPSIVALSRMQRMLPLTLVFPPAYSIFAFVMWRPFVMNANVAVREDMNQLYQSLTIAISDAIKHWPFRDVCLRECQGLYDLMAADTSDAEFATLLELNGSDMHSKSLAFVPLRARHILNAMIDCKMPQSIYTKDEGSRNYGHGESKIDFTDSESTLQDKLVDVLDALQPAKFHWQWVELRLLLNEQALIEKLKTHDMSLADAIQLSSPSSEKGAASENENNFIEIILTRLLVRPDAAPLFSELVHLFGKSLEDSMLLQAKWFLAGQDVLFGRKTIKQRLINIAETKRFSVKTQFSEPWGWCSPCKNPVALKGDKMKVDPMPLEEGEVAEEGMDAKRSIKGFSQVFDSESSTSKQQHGTERALLELILPCIDQSSDESRNSFASDLIKQLNYIEQQITLVTRGPSKPTASTPVTEGQTNKVNSRKTIRGGSPGLARRPTPAPDSSPLSPAALRASISLRVQLLMRFLPILCSDGESSARSMRYMLASVLLRLLGSRVVHEDATVNPMHYTPLRREAESHAEASFVDSSAEGLFDHLLLILHGLLSSSPPSWLRSKPVSKTTNEPTREFSGFEREPLEALQNHLDNMQLPDTIRRRIQAAMPLLPPSIRCSFSCQLPTVPASALVSLQPNTTNSGFNSGSSTVPQRNLVPSSRTTTSGKSKQHDNDLDVDPWTLLEDGAGSCPSASNTDIIGSGDRVNIRAASWLKGAVRVRRTDLTYVGAVDEDN
Length2246
PositionKinase
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.234
Instability index50.41
Isoelectric point8.70
Molecular weight248860.55
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05566
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.06|      32|     197|     419|     462|       1
---------------------------------------------------------------------------
  419-  462 (46.71/48.73)	NFVlkatEAAGKIKSSSEDV...VC...LFRSKGfdaqfqslAFDHVISC
  622-  659 (51.35/28.29)	NFV....NNAFKIKSSSRNLdqnICssaVFESPG........PLHDIIVC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.48|      19|     195|     169|     216|       2
---------------------------------------------------------------------------
  173-  197 (27.76/61.38)	HVRRKSLSEVLirnnvpLLRATWFI
 1767- 1785 (35.72/ 6.34)	HLFGKSLEDSM......LLQAKWFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.72|      38|     195|    1728|    1765|       3
---------------------------------------------------------------------------
 1728- 1765 (61.82/41.52)	SSPSSEKGAASENENNFIEIILTRLLVRPDAAPLFSEL
 1931- 1968 (66.90/45.67)	STPVTEGQTNKVNSRKTIRGGSPGLARRPTPAPDSSPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     198.20|      52|     616|    1186|    1238|       6
---------------------------------------------------------------------------
  964-  992 (30.34/11.30)	KVSCpHHRTAMDGDTTR.SVD.......GIRSGhCED..................
 1186- 1237 (88.57/56.24)	KSTC.DKRLASEIESGR.SVDGELGLPLGVPAG.VEDPDDFFRQKISGGRLPSRV
 1796- 1846 (79.30/52.18)	..TI.KQRLINIAETKRfSVKTQFSEPWGWCSP.CKNPVALKGDKMKVDPMPLEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.09|      18|     616|     267|     291|       7
---------------------------------------------------------------------------
  267-  291 (26.52/32.21)	SFQHRSDQLLSvaDGEEPslhfrWW
  887-  904 (36.57/21.28)	SFVQAPSPILS..DDEDT.....WW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.75|      20|     528|     722|     743|       8
---------------------------------------------------------------------------
  722-  743 (30.39/26.68)	LKQLPGKfvRRALVESGISEGP
 1253- 1272 (37.36/25.14)	FRDLFGK..DRKLFAAGTPKGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.49|      25|     364|     145|     171|      19
---------------------------------------------------------------------------
  145-  171 (38.17/39.26)	CPEDFRKKWIEGLSQPHkRLrSLTDLV
  511-  535 (47.32/36.23)	CDETVSEGWVAKVSHCL.RL.SLKWFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.47|      12|      17|    1096|    1108|      20
---------------------------------------------------------------------------
 1096- 1108 (17.78/15.89)	GrNALMLP..RNVEN
 1114- 1127 (16.68/ 8.26)	G.EAFLLSslRRYEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.84|      37|     815|    1289|    1326|      21
---------------------------------------------------------------------------
 1289- 1326 (57.92/43.52)	MSLIDCIRQTGGAAQEGDPSLVTSAVSAIVGSVgPTLA
 2107- 2143 (67.92/46.25)	MQLPDTIRRRIQAAMPLLPPSIRCSFSCQLPTV.PASA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05566 with Med12 domain of Kingdom Viridiplantae
Unable to open file!