<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05564

Description Uncharacterized protein
SequenceMHRILDDYLRICQRMGVRAEKLHIEMDSIEKGILELISQHGIQKLVMGAASDKYYNRRMMDLKSKKAISVCKQAPASCHIQFVCKGRLIHTRDRSSNEGNADVTSPLVQQVPNSVRSLRSQSVTLGQDRRANLTNPALELFRRVRSANDGHGASFMTVSSPEDTEGFSTPHDRMGTEVSSDESDRLSRMSPSGLSTCSDSAVELAFTPSLINESSENALELTLSRRIIEDLHYSSPPSTLDGGMDDTIYEQLEQARAEAENATLNAYQETVRRRKAEKDAFEAIRKVKASESLYTEELNLRKMTEEKLRKEKEELESMKSLRDKVKEELCLALDQKESLESQIASSELMVKELEQKILSAVDLLQSYKNERDELQMQRDNALREAEELRKKQGEASGTNVPQLFSEFSFSEIKEATSNFNPSSKIGEGGYGSIFKGVLRHTEVAIKMLNSDSMQGPLEFQQEVDVLSKLRHPNLITLIGACPDSWALVYEYLPNGSLEDRLACKNNTPPLSWQARIRIAAELCSALIFLHSSKPHSVVHGDLKPSNILLDANLISKLSDFGICRILSNCESSSSNTTEFWRTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYALDTGKLKSLLDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLYSDVWRVLDAMRVSSGGANSFGLSSEGLLQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDGGHDNSPMTNSKLAHHNLVPNRALRSAIQDWLQNH
Length777
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.457
Instability index51.06
Isoelectric point5.76
Molecular weight86977.51
Publications
PubMed=20075913

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05564
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.80|      18|      22|     300|     317|       1
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  300-  317 (29.24/18.67)	LRKMTEEKL...RKEKEELES
  321-  341 (21.57/11.90)	LRDKVKEELclaLDQKESLES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     144.02|      47|      49|     558|     606|       2
---------------------------------------------------------------------------
  487-  525 (25.09/10.24)	................LVY...EYLPNGSLEDRlacknntpplSW.....QAR..IRIAAElCSA
  530-  571 (64.26/36.97)	HSSKPHSVVHGDLKPSNILLDANLIS...............klSD.....FGI..CRILSN.CES
  572-  618 (54.67/33.46)	SSSNTTEFWRTDPKGTFVYMDPEFLASGELTPK............sdvysFGIilLRLL......
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.24|      15|      15|     192|     206|       3
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  192-  206 (25.10/17.30)	SGLSTCSDSAVELAF
  209-  223 (23.14/15.30)	SLINESSENALELTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     335.14|     106|     278|     375|     485|       4
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  375-  485 (166.69/113.70)	QMQRdNALREAEELRKKQGEASgTNVPQLFSEFSFSEikEATSNFNPSSK..IGEGGY..GSIFKGVLRHTEVAIKML..NSDSMQGPLEFQQEVDVL..SKLRHPNLI...TLIGACPDsW
  657-  773 (168.46/97.92)	QLAR.LALRCCDMNRKSRPDLY.SDVWRVLDAMRVSS..GGANSFGLSSEglLQPPSYfiCPIFQEVMRDPHVAADGFtyEAEAIRGWLDGGHDNSPMtnSKLAHHNLVpnrALRSAIQD.W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.30|      11|      16|     256|     266|       6
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  256-  266 (17.30/12.84)	RAEAENATLNA
  273-  283 (18.00/13.69)	RRKAEKDAFEA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05564 with Med32 domain of Kingdom Viridiplantae
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