<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05560

Description Uncharacterized protein
SequenceMSNNPQYPGLQPLRPPIAGSLDPPRNFVPPMPVQFRPAVPTQQSQQFISMPSQHYQHQPVGPGGVPLIGVGIPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNMHIPSESMMQQSDSQAHSQAPNGYTPGLGGPGMPLSSSYTFAPSTYGQVQANFNSTGQFQPVPQIHALTGSSSQSITTGATLQSNGGQPLVTTVMPLATIAQPQLTKNGPTDWIEHTSATGRTFYYNKKTKVSSWEKPFELMTPIERVDATTNWKEYTSPDGRKYYYNKITNESKWSIPEELKLAREQVEKAIVSGSRPEALLNSHPQPSPTPSATEATPNTDNSTLPSQGEPSSPVSVAPVVTTSISNPQSEMPSGPSLSTSANAITGAKVDELEAPVNTVTPSDTCVGSDKAVVTDINTAVTPMNDVNNDSAQDTLGSADRVPVEDKEDGKNDLIGEKSNDVAAETKAVEPEPPVYANKMAKDAFKALLESVNVGSDWTWDRSMRLIINDKRYGALKTLVERKQAFNEYLNQRKKQEAEEKRMKQKKAREDFKKMLEESTDLTSSTRWSKAVSIFENDERFKAVERDRDRRDMFESFLEELLNKERAKVQEERKRNIMEYRKFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLRDLEKEEEEQKKIQKEEVRKTERKNREEFRKLMGEHIASGILTAKTHWRDYYTKVKDLHAYVAVASNTSGSTPKDLFEDVAEELEKQYHEEKSRIKDAVKLTKITLSSTLTFEDFKSVLLKDISTPPISDFNLKLVFDELLERVKEKEEKEAKKRKRLADDFFHLLHSTKDFTVSSKWEDCRPLVEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKENERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKRQSPVYEMDKEKTKKSRRHASGHESDEGRHKRHKRDHRREGDLEDGEFGDDHVDRW
Length1007
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.059
Instability index57.54
Isoelectric point6.46
Molecular weight114806.91
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05560
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     147.01|      21|      21|      14|      34|       1
---------------------------------------------------------------------------
    6-   29 (26.76/ 9.48)	QYPgLQ...plRP...PIAGSLD....P.PRNFV..P
   30-   51 (25.27/ 8.58)	PMP.VQ....fRP...AVPT..Q....Q.SQQFIsmP
   52-   79 (25.29/ 8.59)	SQH.YQ.hqpvGPggvPLIGVGI....P.PQNQQ..P
   82-  103 (24.92/ 8.37)	SQP.IQ...qlPP...RPSPQLP....P.PSQAI...
  143-  172 (23.17/ 7.31)	GMP.LSssytfAP...STYGQVQanfnS.TGQFQ..P
  345-  366 (21.61/ 6.37)	SSP.VS....vAP....VVTTSI....SnPQSEM..P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     485.81|      65|      65|     460|     524|       2
---------------------------------------------------------------------------
  413-  454 (43.92/25.16)	.A.VTPMND.V.NND.SAQDT....L.GSA.D...............RVPVEDKEDGK.NDLI............GEKS..ND.........
  460-  524 (97.68/66.45)	KA.VEPEPP.VYANK.MAKDAFKALL.ESV.N.VG...SDWTWDRSMRLIINDKRYGALKTLV............ERKQAFNEYL......N
  527-  598 (84.84/56.59)	KK.QEAEEK.RMKQK.KAREDFKKMLeEST.D.LT...SSTRWSKAVSIFENDERFKAVERDR............DRRDMFESFLeellnkE
  599-  659 (74.73/48.83)	RAkVQEERK...RNI.M...EYRKFL.ESC.DfIK...ASTQWRKVQDRLEADERCSRLEK.I............DRLEIFQDYL......R
  669-  737 (52.61/31.83)	KK.IQKEEV.RKTER.KNREEFRKLMgEHI.A.SGiltAKTHW.RDY........YTKVKDLHayvavasntsgsTPKDLFED.........
  739-  800 (63.73/40.37)	.A.EELEKQ.YHEEKsRIKDAVK..L.TKI.T.LS...STLTFEDFKSVLLKDISTPPISDF.............NLKLVFDELL......E
  804-  871 (68.30/43.88)	....EKEEKeAKKRK.RLADDFFHLL.HSTkD.FT...VSSKWEDCRPLVEDSQEFRSIGDES............LCKEVFEEYI..aqlkE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      83.87|      15|      15|     874|     888|       3
---------------------------------------------------------------------------
  874-  888 (23.65/11.31)	KENERKR.KEERAKKE
  890-  904 (21.69/ 9.71)	DREERER.RKGKQRKE
  905-  920 (18.40/ 7.03)	KEGGRERgKDEAHKKD
  961-  975 (20.13/ 8.44)	KEKTKKS.RRHASGHE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     171.73|      39|      40|     222|     260|       4
---------------------------------------------------------------------------
  189-  209 (25.65/12.83)	.........TGATLQSNG.......GQP..LVTTVMPLA
  222-  260 (74.47/53.44)	TDWIEHTSATGRTFYYNKKTKVSSWEKPFELMTPIERVD
  263-  301 (71.61/51.05)	TNWKEYTSPDGRKYYYNKITNESKWSIPEELKLAREQVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.06|      22|      72|     305|     327|       5
---------------------------------------------------------------------------
  303-  320 (23.90/10.73)	.....AI..VSGSRPEALLNSHPQP
  321-  344 (27.57/18.86)	SPTPsAT.eATPNTDNSTLPSQGEP
  372-  391 (19.60/ 7.68)	STSA...naITGAKVDEL..EAPVN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05560 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAKENERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKRQSPVYEMDKEKTKKSRRHASGHESDEGRHKRHKRDHRREGDLEDGEFGDDHVDRW
2) EQVEKAIVSGSRPEALLNSHPQPSPTPSATEATPNTDNSTLPSQGEPSSPVSVAPVVTTSISNPQSEMPSGPSLSTSANAITGAKVDELEAPVNTVTPSDTCVGSDKAVVTDINTAVTPMNDVNNDSAQDTLGSADRVPVEDKEDGKNDLIGEKSNDVAAETKAVEPEPPVY
3) MSNNPQYPGLQPLRPPIAGSLDPPRNFVPPMPVQFRPAVPTQQSQQFISMPSQHYQHQPVGPGGVPLIGVGIPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNMHIPSESMMQQSDSQAHSQAPNGYTPGLGGPGMPLSSSYTF
4) QANFNSTGQFQPVPQIHALTGSSSQSITTGATLQSNGGQP
872
298
1
161
1007
469
152
200










Molecular Recognition Features






MoRF SequenceStartStop




1) VYEMDKEK
956
963