<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05559

Description Uncharacterized protein
SequenceMSNNPQYPGLQPLRPPIAGSLDPPRNFVPPMPVQFRPAVPTQQSQQFISMPSQHYQHQPVGPGGVPLIGVGIPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNMHIPSESMMQQSDSQAHSQAPNGYTPGLGGPGMPLSSSYTFAPSTYGQVQANFNSTGQFQPVPQIHALTGSSSQSITTGATLQSNGGQPLVTTVMPLATIAQPQLTKNGPTDWIEHTSATGRTFYYNKKTKVSSWEKPFELMTPIERVDATTNWKEYTSPDGRKYYYNKITNESKWSIPEELKLAREQVEKAIVSGSRPEALLNSHPQPSPTPSATEATPNTDNSTLPSQGEPSSPVSVAPVVTTSISNPQSEMPSGPSLSTSANAITGAKVDELEAPVNTVTPSDTCVGSDKAVVTDINTAVTPMNDVNNDSAQDTLGSADRVPVEDKEDGKNDLIGEKSNDVAAETKAVEPEPPVYANKMEAKDAFKALLESVNVGSDWTWDRSMRLIINDKRYGALKTLVERKQAFNEYLNQRKKQEAEEKRMKQKKAREDFKKMLEESTDLTSSTRWSKAVSIFENDERFKAVERDRDRRDMFESFLEELLNKEEKEAKKRKRLADDFFHLLHSTKDFTVSSKWEDCRPLVEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKENERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKRQSPVYEMDKEKTKKSRRHASGHESDEGRHKRHKRDHRREGDLEDGEFGDDHVDRW
Length800
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.085
Instability index62.79
Isoelectric point6.33
Molecular weight90057.05
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05559
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     374.97|      65|      66|     544|     608|       1
---------------------------------------------------------------------------
  477-  540 (82.30/53.12)	...DAFKAL.L.ESVNVGSDWTWDRSMRLIINDKRYGALKTLVERKQAFNEYLNQRKKQEA..EEKRmKQK
  541-  607 (97.64/64.53)	KarEDFKKM.LEESTDLTSSTRWSKAVSIFENDERFKAVERDRDRRDMFESFLEELLNKEE..KEAK.KRK
  608-  674 (84.15/54.49)	RlaDDFFHL.LHSTKDFTVSSKWEDCRPLVEDSQEFRSIGDESLCKEVFEEYIAQL..KEEakENER.KRK
  677-  713 (47.41/27.14)	R..AKKEKD.REERERRKGKQR..........KEKEGGRERGKD....................EAH.KKD
  714-  763 (63.47/39.10)	K..ADSDSMeLTE.......IQTSKENKRSEDDNR.....KQRKKR...QSPVYEM.DKEK..TKKS.RRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     251.81|      39|      40|     222|     260|       2
---------------------------------------------------------------------------
  151-  177 (20.71/ 6.82)	............TFapstYGQVQANFNS.T..GQFQ...PVPQIH
  180-  209 (42.28/21.49)	TGSSSQSITTGATL....QSNG.......G..QP..LVTTVMPLA
  222-  260 (71.55/41.40)	TDWIEHTSATGRTF....YYNKKTKVSSWE..KPFELMTPIERVD
  263-  301 (61.73/34.72)	TNWKEYTSPDGRKY....YYNKITNESKWS..IPEELKLAREQVE
  323-  353 (33.22/15.33)	T.....PSATEATP....NTDNSTLPSQGEpsSPVS.VAPV....
  372-  395 (22.31/ 7.91)	.....STSANAIT.........GAKVDELE..APVNTVTP.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     129.95|      21|      21|      14|      34|       3
---------------------------------------------------------------------------
   14-   34 (41.74/21.39)	RP...PIAGSLDPPRNFV..P..PMPVQ
   36-   56 (27.97/11.61)	RP...AVPT..QQSQQFIsmP..SQHYQ
   61-   86 (29.03/12.37)	GPggvPLIGVGIPPQNQQ..PqfSQPIQ
   89-  107 (31.21/13.92)	PP...RPSPQLPPPSQAI.....PMPV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.44|      19|      19|     422|     440|       4
---------------------------------------------------------------------------
  397-  409 (14.56/ 6.81)	......DTCV.GSDKAVVTD
  421-  439 (31.39/25.11)	NNDSAQDTLG.SADRVPVED
  440-  459 (24.49/17.61)	KEDGKNDLIGeKSNDVAAET
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05559 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAKENERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKRQSPVYEMDKEKTKKSRRHASGHESDEGRHKRHKRDHRREGDLEDGEFGDDHVDRW
2) EQVEKAIVSGSRPEALLNSHPQPSPTPSATEATPNTDNSTLPSQGEPSSPVSVAPVVTTSISNPQSEMPSGPSLSTSANAITGAKVDELEAPVNTVTPSDTCVGSDKAVVTDINTAVTPMNDVNNDSAQDTLGSADRVPVEDKEDGKNDLIGEKSNDVAAETKAVEPEPPVYAN
3) MSNNPQYPGLQPLRPPIAGSLDPPRNFVPPMPVQFRPAVPTQQSQQFISMPSQHYQHQPVGPGGVPLIGVGIPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNMHIPSESMMQQSDSQAHSQAPNGYTPGLGGPGMPLSSSYTF
4) QANFNSTGQFQPVPQIHALTGSSSQSITTGATLQSNGGQP
665
298
1
161
800
471
152
200










Molecular Recognition Features






MoRF SequenceStartStop




1) VYEMDKEKTK
749
758