<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05558

Description Uncharacterized protein
SequenceMAIEIIARFLHHKLTSRILALVQRNMPAHWGPFLHQLQQLAANSTVLRSLKHVTPESLLPLDFNSTTGNGIKLLSSDWKTTPTLELNAVMADSCAVQSRHDSWSLLWLPIDLILEDAMDGNHVAEASAVEALTGLVKALQAVNGTAWHSAFLGLWIAALRLVQRERDPGEGPVPRLDTCLSMLLCITTLVVANLIEEEEGKLIEEAERSPANQRMDKQALGERHGALVTSLQLLGDYENLLTPPQSVIWGANQAAAKATLFVSGHSGYLEHTNVNDLPTNCSGNLRHLIVEACIARHLLDTSAYFWHGYVSTPFNQLPHSIPNHLPSWSSLMKGSPLTPPLVNVLVATPASSLAEIEKIFEFAINGSDEEKISAATILCGASLVRGWNVQEHIVFFIINMLSPPVPPKYSGTESYLISHAPFLNVFLVGISSVDSVQIFSLHGVVPLLAAVLMPICEAFGSSVPNVSWTAVTGEKLTCHAVFSNAFILLLRLWRFDRPPVEHVMGGAATPALGSQLGPEYLLLVRNCMLAAFGKSPRDRVRSRRFSKMIRFSLEPLFMDSFPKLNIWYRQHQECIASICNTLAPGGPVSQIVEALLTMMCKKINRSAQSLTPTTSGSSNSSLPSLDDALMKLKVPAWDILEATPFVLDAALTACAHGSLSPRELATGLKDLADFLPATLGTIVSYLSSEVTRCIWKPAFMNGTDWPSPAANLSIVEQQIKKILAATGVDVPSLAIDGNAPATLPLPLAALLSLTITYKLDKSCERFVILAGPSLIALSSGCPWPCMPIVGALWAQKVKRWSDFFVFSASATVFHHSRDAVVQLLRSCFASTLGLGSACIYNNGGVGTLLGHGFGSHYSGGFTPVAPGFLYLRVYRSIRDVMFLTDEIVSLLMLSVRDIANGGLPKGEVEKLKKTKYGIRYGQVSLAASMTRVKHAALLGASILWISGGSGLVQSLITETLPSWFLSAQGLEQEGGESGVVVAMLRGYALACFAVLGGTFAWGIDSLSPASKRRPKVLEIHLEFLANALDRKISLRCDCATWRAYVSGVMSLMVSCTPLWIQELDVGILKRMSSGLRQLNEEDLALRLLEIRGTSVMGEAAEMICQTRL
Length1108
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy0.248
Instability index46.02
Isoelectric point6.86
Molecular weight120226.27
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05558
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.96|      18|      94|     944|     963|       1
---------------------------------------------------------------------------
  261-  278 (33.66/13.66)	FVSGHSGYLEHTNVNDLP
  944-  961 (32.30/18.03)	WISGGSGLVQSLITETLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.43|      30|      47|      32|      63|       2
---------------------------------------------------------------------------
   32-   63 (43.05/34.08)	PFLhQLQQLAANSTVLRSlKHVTPESL.LPLDF
   82-  112 (49.38/29.27)	PTL.ELNAVMADSCAVQS.RHDSWSLLwLPIDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     199.08|      43|     116|     616|     661|       3
---------------------------------------------------------------------------
  616-  658 (70.41/38.24)	GSSNSSLPSLDDALMKLKVPAWDILEATPFVLDAALTACAHGS
  737-  779 (65.43/34.69)	GNAPATLPLPLAALLSLTITYKLDKSCERFVILAGPSLIALSS
  780-  815 (63.24/33.14)	GCPWPCMPIV.GALWAQKVKRWSDF....FVFSASATVFHH..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.70|      29|     139|     300|     338|       5
---------------------------------------------------------------------------
  307-  338 (49.38/45.89)	HGYVS......TPFNQ.LPHSIPNhlPSWSSlMKGSPLT
  442-  477 (45.33/18.46)	HGVVPllaavlMPICEaFGSSVPN..VSWTA.VTGEKLT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.46|      24|     634|     360|     430|       8
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  360-  383 (39.26/70.96)	FEFAINGSDEEKISAATILCGASL
  493-  516 (44.20/25.55)	WRFDRPPVEHVMGGAATPALGSQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.84|      21|     634|     396|     430|       9
---------------------------------------------------------------------------
  410-  430 (37.42/35.74)	SGTESYLISHAP.FLNVFLVGI
 1046- 1067 (35.42/ 9.83)	SGVMSLMVSCTPlWIQELDVGI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05558 with Med33 domain of Kingdom Viridiplantae
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