<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05554

Description Uncharacterized protein
SequenceMPVFFVLKTKNSLCSDEDEKLLNLESVRGVEWKEAKRPLPVVGKNNVTPPEEKTNDDETLVYANKLEAKNAFKALLESVSVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRQNIAEYRKFLESCDYVKVNSPWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQKRIQKDRIRRGERKNRDAFRKLLGEHVSAGILTAKTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQYHEDKTLIKDTVKSGKITVVTTSVFEEFKVAVLEGAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKDRKREEEKAKKEKEREEKRKEKEKKEKDREREKDKSKERNKKDETDSDNQDMADSHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKHANSPESDNENRHRRHKRDHWDGSRKTGGHEELEDGELGDDAEN
Length622
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-1.441
Instability index47.60
Isoelectric point6.24
Molecular weight74399.10
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05554
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.35|      24|      25|     464|     487|       1
---------------------------------------------------------------------------
  465-  492 (35.80/13.44)	EKAKEKDRKREEEKAKKEKEREE.krkeK
  493-  520 (28.97/ 9.24)	EK.KEKDREREKDKSKERNKKDEtdsdnQ
  521-  541 (31.58/10.85)	DMADSHGYK.EEKK..KEKDKER.....K
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     471.99|      64|      65|      83|     146|       2
---------------------------------------------------------------------------
   32-   79 (57.61/21.94)	....WKEAKRPLPVVGKNNV....TPPEE.KTNDDETLVYANKLE.................AK............NAF.KALLE..SV
   83-  146 (100.84/43.51)	SDWTWEQAMREIINDKRYNAL..KTLGER.KQAFNEYLGQRKKLEAEERRMKQKR.......AR............EEF.TKMLE..EC
  151-  214 (91.90/39.05)	SSMRWSKAISMFENDERFNAV..ERPRDR.EDLFESYMVELERKEKENAAEEHRQ.......NI............AEY.RKFLE..SC
  219-  288 (84.54/35.37)	VNSPWRKIQDRLEDDDRYLRL..EKI.DR.LLVFQDYIRDLEKEEEEQKRIQKDRirrgerkNR............DAF.RKLLG..EH
  296-  377 (59.18/22.72)	AKTQWREYCLKVRDLPQYQAVasNTSGSTpKDLFEDVAEDLEKQYHEDKTLIKDT.......VKsgkitvvttsvfEEFkVAVLEgaAC
  381-  421 (50.64/18.46)	SEINL.........................KLIFEELL.ERAK.EKEEKEAK.KR.......QR..........laDDF.TNLLY..TF
  428-  460 (27.29/ 6.81)	SKWEDCKSLFE..ETQEYRSI..GDESYS.REIFEEYI...................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.24|      24|      24|     565|     588|       3
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  544-  561 (23.96/ 9.07)	..KRHQS.....SIDDVDSEK.EEKE
  565-  588 (41.26/20.95)	KSRRHGSER.KKSRKHANSPE.SDNE
  590-  615 (35.02/16.66)	RHRRHKRDHwDGSRKTGGHEElEDGE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05554 with Med35 domain of Kingdom Viridiplantae
Unable to open file!