<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05545

Description "Uncharacterized protein, isoform B"
SequenceMSAALTELATLDVTAMEREFFESDAATAMSCRAPFQPEEQYEQLRRPNPGPGAAIPIAPQLATALPLEQQAHLFNEFASVGYAPAAFAPGPPVSFAAPSQAPIMADVASGFGHSKLSASATVFIPNQSSNSNIGKRGPPPQQQQYQHQHQPSGPAPYAQQHQQRYLNGLKQQHQQQKNYNHHQQNLQYNNDMQKLSNSVQARLHIGQQPPHNGAMNNYYQQQQPQQQQQQQQYFHQQPQPSTSSAAVSTSSASSHPDMETIALEYLDTVIHCLNQNPGQFDTIASRFLTIFDGMESNNYVLSIAMEDIFEKSIEQPNFRYMGAKLYNLLHMLNLKPDSLFHTLLKCKLDYHRAEVDKYMQSVEQQQKVRETALFLAELYMQLRGDDDARIQLIAVNIVYSLKQLLAYESSENVRCICQTLKLAGYDLSADCKQDMQYIIALLQAFEFKSPGKYAMVANVIALQQNNWGRKVSNALGGDDDVVAKPPEPPRLSDEPVFYGPDGRELTAEETDFLAAEDDATGSDGDEFDVRDNDLDLDPEMDEETERAYKDFCKQGKQSQANKKS
Length564
PositionTail
OrganismDrosophila virilis (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila.
Aromaticity0.09
Grand average of hydropathy-0.652
Instability index52.56
Isoelectric point5.01
Molecular weight63180.60
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
RNA binding	GO:0003723	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05545
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.19|      11|      20|     161|     171|       1
---------------------------------------------------------------------------
  161-  171 (20.73/ 8.44)	H..QQRYLNGLKQ
  204-  216 (17.45/ 6.09)	HigQQPPHNGAMN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.31|      27|      31|      51|      81|       2
---------------------------------------------------------------------------
   51-   81 (35.92/26.26)	PGAAIPiAPQLATALPleQQAHLFNEFASvG
   84-  110 (48.39/22.20)	PAAFAP.GPPVSFAAP..SQAPIMADVAS.G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.51|      27|      52|     172|     198|       3
---------------------------------------------------------------------------
  115-  150 (34.15/15.83)	KLSAS.......................atvfIPNQSSNSNIGKrgpppQQQQYQHQHQ
  151-  193 (30.48/13.27)	...PS........gpapyaqqhqqrylnglkqQHQQQKNYNHHQ.....QNLQYNNDMQ
  194-  245 (29.88/12.85)	KLSNSvqarlhigqqpphngamnnyyqqqqpqQQQQQQQY.FHQ.....QP.QPSTSSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.72|      19|      19|     425|     443|       4
---------------------------------------------------------------------------
  425-  443 (33.85/19.24)	YDLSADCKQDM.QYIIALLQ
  445-  464 (28.87/15.49)	FEFKSPGKYAMvANVIALQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.23|      19|      19|     256|     274|       5
---------------------------------------------------------------------------
  256-  274 (34.60/20.97)	P.DMETIALE.............Y....LDTVIHCLN
  277-  295 (25.53/13.94)	PgQFDTIASR.............F....L.TIFDGME
  298-  333 (17.09/ 7.40)	N.YVLSIAMEdifeksieqpnfrYmgakLYNLLHMLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.12|      20|      20|     499|     518|       6
---------------------------------------------------------------------------
  499-  518 (35.31/23.90)	GPDGRELTAEETDF.LAAEDD
  521-  541 (32.82/21.71)	GSDGDEFDVRDNDLdLDPEMD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05545 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEETDFLAAEDDATGSDGDEFDVRDNDLDLDPEMDEETERAYKDFCKQGKQSQANKKS
2) ASATVFIPNQSSNSNIGKRGPPPQQQQYQHQHQPSGPAPYAQQHQQRYLNGLKQQHQQQKNYNHHQQNLQYNNDMQKLSNSVQARLHIGQQPPHNGAMNNYYQQQQPQQQQQQQQYFHQQPQPSTSSAAVSTSSAS
3) RAPFQPEEQYEQLRRPNPGPGAAIPIAPQL
507
118
32
564
253
61










Molecular Recognition Features






MoRF SequenceStartStop




1) DGRELTAEETDFLAAEDDATGSDGDEFDVRDNDLDLDPEMDEETERAYKDFCKQGKQ
501
557