<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05543

Description "Uncharacterized protein, isoform B"
SequenceMCTCVLVCVSGLTCFAATAAAAHAPTLLARCLAVRQPATAKTVAHSGTSILVPNKTQYTRSSSDLDGESYCNISAEDVKTEIIEHEPELGMLERQTSTPLSASYYKPTDLTYNPRKRKAQMDELDGGGDLTGGVGGVSIVGGVVGALTLTPIKSTTHSQQQQQQQQQQHQQMNHNQIAFHTLQQHFSHNLSHSSHNGNGHPQSQQQQQQQQQQQQTHSNNMAQKRDRDRDRDLSLSPTMSNHLSTNNHHSSTSLELHSLATTTTTASSGISSNAATPKISNNNNGTGSSNLSASHVDEYGVFGEYVAITIRKLKTSKSKIVVKHLINNLLYEAELGKYDQGMPASKEPPQLYKMQ
Length355
PositionKinase
OrganismDrosophila virilis (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila.
Aromaticity0.04
Grand average of hydropathy-0.671
Instability index44.68
Isoelectric point7.75
Molecular weight38612.37
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05543
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.08|      14|      21|     160|     173|       1
---------------------------------------------------------------------------
  160-  173 (29.40/12.73)	QQQQQQQQQHQQMN
  183-  196 (23.68/ 9.08)	QQHFSHNLSHSSHN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.77|      36|     216|      32|      78|       2
---------------------------------------------------------------------------
   32-   67 (58.03/46.73)	LAVRQPATAKTVAHSGTSILVPNKTQYTRSSSDLDG
   91-  126 (61.73/29.55)	MLERQTSTPLSASYYKPTDLTYNPRKRKAQMDELDG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05543 with Med12 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SYYKPTDLTYNPRKRKAQMDELDGGGDLTGGVG
2) TLTPIKSTTHSQQQQQQQQQQHQQMNHNQIAFHTLQQHFSHNLSHSSHNGNGHPQSQQQQQQQQQQQQTHSNNMAQKRDRDRDRDLSLSPTMSNHLSTNNHHSSTSLELHSLATTTTTASSGISSNAATPKISNNNNGTGSSNLSAS
103
148
135
294










Molecular Recognition Features






MoRF SequenceStartStop




NANANA