<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05541

Description Uncharacterized protein
SequenceMVKPSSQEGLKLTINKTGSGKRESKGVATSSSSSSASSKKQHTGLKPGVNSGPASKKALSSASGTGLSSSSKHIFQKANSSGNLSSKLGGSSTSGGGLPLTKSNSTNSFQEHSVPRRRPSMCSPGNTSGGGVQRKSSLTASGSASGSGSGPGLGAGRMSPAALTGSMSQPPPRFDHHTDMMTILQYASPTMAASMEGFIKRLHNRFQIPKLSQRPSGSSVAAGHTAEQASATAASFSSIASTSSSQEQEQQQLNADLSALASSLTATPCSSSGTQKPSTAPSPATSRMLLNLSSSGTVSAVGDGIDEELLASLAGK
Length316
PositionMiddle
OrganismDrosophila virilis (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila.
Aromaticity0.02
Grand average of hydropathy-0.479
Instability index57.43
Isoelectric point10.26
Molecular weight31634.65
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05541
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     120.11|      20|      20|     117|     136|       1
---------------------------------------------------------------------------
   40-   58 (26.44/ 9.00)	KQHTGLKPGVNS.GPAS.KKA
   83-  103 (27.55/ 9.76)	NLSSKLGGSSTSGGGLPlTKS
  117-  136 (36.06/15.57)	RRPSMCSPGNTSGGGVQ.RKS
  140-  159 (30.06/11.47)	ASGSASGSGSGPGLGAG.RMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.34|      19|      20|     218|     237|       2
---------------------------------------------------------------------------
  218-  236 (30.65/15.73)	SSVAAGHTAEQA......SATAASF
  240-  264 (23.69/ 6.69)	ASTSSSQEQEQQqlnadlSALASSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.04|      26|     106|     170|     197|       6
---------------------------------------------------------------------------
  163-  188 (47.38/42.80)	LTGSMSQPPPRFDHHTDMMTILQYAS
  191-  216 (44.66/31.08)	MAASMEGFIKRLHNRFQIPKLSQRPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05541 with Med1 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATAASFSSIASTSSSQEQEQQQLNADLSAL
2) LTATPCSSSGTQKPSTAPSPATSRMLLNLS
3) MVKPSSQEGLKLTINKTGSGKRESKGVATSSSSSSASSKKQHTGLKPGVNSGPASKKALSSASGTGLSSSSKHIFQKANSSGNLSSKLGGSSTSGGGLPLTKSNSTNSFQEHSVPRRRPSMCSPGNTSGGGVQRKSSLTASGSASGSGSGPGLGAGRMSPAALTGSMSQPPPRFDHHTDMMTILQYA
231
264
1
260
293
187










Molecular Recognition Features






MoRF SequenceStartStop




1) ASKKAL
2) EGFIKRLHNRFQIPKL
3) MVKPSSQEGLKLTINKTG
4) RMLLNL
5) SSKHIFQKAN
6) SSKKQHTGLKPGVN
54
196
1
287
70
37
59
211
18
292
79
50