<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05513

Description Uncharacterized protein
SequenceMATPAVVSSDEDNSPTAEHPRPESAAPVAEASGPGAAAAAAAAAAVERTAAGDAPSAPAPPSTSSATLPPPPASPASHAAPGPPRPPFAGSAAYVTPPSSSSSAAFSYNILPRAPPPRQVSGGVPNQQLSSSPASPMPPAALQPPAPQQYFGNRPSFSYNVVSHANASLPTGQQFQLDTGTNRAVQVPMFAPPASLQPPAPGQLPRPSAPFPGAMTPNLPGSIRSPFPVPPRTSNILYGSNPQQGNLDASASKLDAPSASEASPHTMQSLPASGPEVFGAVGGFVPGQRSSNLSAPPSLLGRPVAPSASSLPQTSPSGAAPGAVPQTTQQQFYPSYPSAPGIVPPQPLWGYPPHPTSFLQSPFQSYPPGPLGPLGRPMVGTSAVTTSVTNIQPPGVTTIGGDPKELPPANPGSEQPLHTSAVPHPTGHGNQVNDQLEDKRSTGIQDSDAWSAHKTEAGVLYYYNALTGESTYQRPPGYMGELEKVAAQPVPASWDKIVGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGSLKGNSSLHDAGTVGNKGETGVEISTPAIQTGGRDSLPLRQAVASASPSALDLIKKKLQDAGASSLSSPLATPSSTASELNGSKPADGAPKGQQGSINGEKPKDNNGNGNMSDSSSDSDDEEHGPSKEDCIREFKEMLKERGVAPFSKWEKELPKLVFDPRFKAIPSHSTRRTIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEDIDPKTGYQEFKRKRGTDPRFEGLDRKEREALFKEKVRAIEEKVQSVRNALITDFKSMLRECKDIISTSHWTKVKEHIRSDPRYKAVKHEERENVFNEYIAELKSAEREVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDAVSSYQALLVEIIKDPKASWTESKPKLDKDPQGRALNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITQEIAARTTDEGKTAISSWSEAKGLLRSDPRYNKVSSKDRESIWRRYADDMARKLKQSDTEKLDTDGRQQRRSSDPPRRR
Length1055
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.787
Instability index56.87
Isoelectric point8.56
Molecular weight113727.18
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05513
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            11|     473.23|      49|      49|     262|     310|       1
---------------------------------------------------------------------------
   14-   59 (41.69/10.73)	.SP................TAE.HP.RPE..S.......AAPVAEA..SG............PG.............A..........A.AAAAA.A.AAVERT.AagdAPSAPA
   60-  105 (40.36/10.14)	P.P................STS.SAtLPPppA.......SPASHAA..PGP.........PRPP..........fAGS..........A.AYVTP.P.S..........SSSSAA
  111-  143 (40.35/10.13)	..........................LPR..A.......PPP..RQ..VSG.........GVPN...........QQL..........S...SSP.A.S....P.M...PPAALQ
  145-  210 (36.80/ 8.56)	PAPqqyfgnrpsfsynvvsHAN.AS.LPT..GqqfqldtGTNRAVQ..VPM.........FAP..............P..........A.SLQPPaP.GQLPRP.S...AP....
  212-  260 (31.37/ 6.15)	..P................GAMtPN.LPG..S.......IRSPFP................VPP...........RTSnilygsnpqqG.NLDAS.A.SKLD.......APSAS.
  263-  310 (85.55/30.20)	.SP................HTM.QS.LPA..S.......GPEVFGA..VGG.........FVPG...........QRS..........S.NLSAP.P.SLLGRP.V...APSASS
  311-  357 (39.27/ 9.66)	..........................LPQ..T.......SPS..GA..APGavpqttqqqFYPS...........YPS..........A.PGIVP.PqPLWGYP......PHPTS
  360-  383 (31.39/ 6.16)	QSP..................F.QS.YP..................................PG..............................P.L.GPLGRPmV...GTSA..
  386-  414 (39.32/ 9.68)	TSV................TNI.Q...P............PGV.TT..IGG.........................DP..........K.EL..P.P............ANPGSE
  482-  541 (41.65/10.71)	LEK................VAA.QP.VPA..S.......WDKIVGT..DWS.........IVTTsdgkkyyydnkQKV..........S.SWQLP.P.EVAELN.K...NADSGS
  607-  656 (45.47/12.41)	SSP................LAT.PS.STA..S.........ELNGSkpADG.........APKG...........QQG..........SiNGEKP.K.DNNGNG.N...MSDSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     369.02|      59|      66|     661|     719|       2
---------------------------------------------------------------------------
  661-  715 (83.75/47.82)	..............EEHGPSKEDCIREFKEMLKE............RGVAPFS.KWEKELPKLVFDPRFKAI.P..S...HSTRRTIF
  716-  783 (71.42/39.67)	DHFV..rtradeerKEKRAAQKAAVEAYKQLLEE..........asEDIDPKT.GYQEFKRKRGTDPRFEGL....D...RKEREALF
  784-  846 (74.05/41.41)	KEKV......raieEKVQSVRNALITDFKSMLRE...........cKDIISTS.HWTKVKEHIRSDPRYKAV....K...HEERENVF
  847-  900 (24.94/ 9.00)	NEYIaelksaerevEQAAKAKVDEQAKLRE..RE............RETRKRKeREEQEMERVKLKIR....................
  902-  952 (52.63/27.28)	.....................KDAVSSYQALLVE............IIKDPKA.SWTESKPKLDKDPQGRALnPdlG...QGDAEKLF
  954- 1023 (62.23/33.61)	DH.V.........kDLY....ERCVRDFRALLSEvitqeiaarttdEGKTAIS.SWSEAKGLLRSDPRYNKV.S..SkdrESIWRRYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.13|      16|     123|     424|     447|       5
---------------------------------------------------------------------------
  424-  447 (25.28/29.49)	HPTGH.GNqvndqledKRSTGIQDS
  549-  565 (24.54/12.09)	HDAGTvGN........KGETGVEIS
  566-  576 (19.32/ 7.99)	TPAI..............QTGGRDS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05513 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAFSYNILPRAPPPRQVSGGVPNQQLSSSPASPMPPAALQPPAPQQYFGNRPSF
2) AGASSLSSPLATPSSTASELNGSKPADGAPKGQQGSINGEKPKDNNGNGNMSDSSSDSDDEEHGPSKEDCIREFK
3) AKAKVDEQAKLRERERETRKRKEREEQEME
4) ASLPTGQQFQLDTGTNRAVQVPMFAPPASLQPPAPGQLPRPSAPFPGAMTPNLPGSIRSPFPVPPRTSNILYGSNPQQGNLDASASKLDAPSASEASPHTMQSLPASGPEVFGAVGGFVPGQRSSNLSAPPSLLGRPVAPSASSLPQTSPSGAAPGAVPQTTQQQFYPSYPSA
5) IVPPQPLWGYPPHPTSFLQSPFQSYPPGPLGPLGRPMVGTSAVTTSVTNIQPPGVTTIGGDPKELPPANPGSEQPLHTSAVPHPTGHGNQVNDQLEDKRSTGIQDSDAW
6) MATPAVVSSDEDNSPTAEHPRPESAAPVAEASGPGAAAAAAAAAAVERTAAGDAPSAPAPPSTSSATLPPPPASPASHAAPGPPRPPFAGSAAYVT
7) QLPPEVAELNKNADSGSLKGNSSLHDAGTVGNKGETGVEISTPAIQTGGRDSLPLRQAVASA
104
601
864
167
342
1
525
157
675
893
339
450
96
586










Molecular Recognition Features






MoRF SequenceStartStop




1) AFSYNIL
2) DLIKKKL
3) GKKYYY
4) IWRRYA
5) SAAPVAEASGPGAAAAAAAAAAVERTAAG
105
592
510
1018
24
111
598
515
1023
52