<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05513

Description Uncharacterized protein
SequenceMATPAVVSSDEDNSPTAEHPRPESAAPVAEASGPGAAAAAAAAAAVERTAAGDAPSAPAPPSTSSATLPPPPASPASHAAPGPPRPPFAGSAAYVTPPSSSSSAAFSYNILPRAPPPRQVSGGVPNQQLSSSPASPMPPAALQPPAPQQYFGNRPSFSYNVVSHANASLPTGQQFQLDTGTNRAVQVPMFAPPASLQPPAPGQLPRPSAPFPGAMTPNLPGSIRSPFPVPPRTSNILYGSNPQQGNLDASASKLDAPSASEASPHTMQSLPASGPEVFGAVGGFVPGQRSSNLSAPPSLLGRPVAPSASSLPQTSPSGAAPGAVPQTTQQQFYPSYPSAPGIVPPQPLWGYPPHPTSFLQSPFQSYPPGPLGPLGRPMVGTSAVTTSVTNIQPPGVTTIGGDPKELPPANPGSEQPLHTSAVPHPTGHGNQVNDQLEDKRSTGIQDSDAWSAHKTEAGVLYYYNALTGESTYQRPPGYMGELEKVAAQPVPASWDKIVGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGSLKGNSSLHDAGTVGNKGETGVEISTPAIQTGGRDSLPLRQAVASASPSALDLIKKKLQDAGASSLSSPLATPSSTASELNGSKPADGAPKGQQGSINGEKPKDNNGNGNMSDSSSDSDDEEHGPSKEDCIREFKEMLKERGVAPFSKWEKELPKLVFDPRFKAIPSHSTRRTIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEDIDPKTGYQEFKRKRGTDPRFEGLDRKEREALFKEKVRAIEEKVQSVRNALITDFKSMLRECKDIISTSHWTKVKEHIRSDPRYKAVKHEERENVFNEYIAELKSAEREVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDAVSSYQALLVEIIKDPKASWTESKPKLDKDPQGRALNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITQEIAARTTDEGKTAISSWSEAKGLLRSDPRYNKVSSKDRESIWRRYADDMARKLKQSDTEKLDTDGRQQRRSSDPPRRR
Length1055
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.787
Instability index56.87
Isoelectric point8.56
Molecular weight113727.18
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05513
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            11|     473.23|      49|      49|     262|     310|       1
---------------------------------------------------------------------------
   14-   59 (41.69/10.73)	.SP................TAE.HP.RPE..S.......AAPVAEA..SG............PG.............A..........A.AAAAA.A.AAVERT.AagdAPSAPA
   60-  105 (40.36/10.14)	P.P................STS.SAtLPPppA.......SPASHAA..PGP.........PRPP..........fAGS..........A.AYVTP.P.S..........SSSSAA
  111-  143 (40.35/10.13)	..........................LPR..A.......PPP..RQ..VSG.........GVPN...........QQL..........S...SSP.A.S....P.M...PPAALQ
  145-  210 (36.80/ 8.56)	PAPqqyfgnrpsfsynvvsHAN.AS.LPT..GqqfqldtGTNRAVQ..VPM.........FAP..............P..........A.SLQPPaP.GQLPRP.S...AP....
  212-  260 (31.37/ 6.15)	..P................GAMtPN.LPG..S.......IRSPFP................VPP...........RTSnilygsnpqqG.NLDAS.A.SKLD.......APSAS.
  263-  310 (85.55/30.20)	.SP................HTM.QS.LPA..S.......GPEVFGA..VGG.........FVPG...........QRS..........S.NLSAP.P.SLLGRP.V...APSASS
  311-  357 (39.27/ 9.66)	..........................LPQ..T.......SPS..GA..APGavpqttqqqFYPS...........YPS..........A.PGIVP.PqPLWGYP......PHPTS
  360-  383 (31.39/ 6.16)	QSP..................F.QS.YP..................................PG..............................P.L.GPLGRPmV...GTSA..
  386-  414 (39.32/ 9.68)	TSV................TNI.Q...P............PGV.TT..IGG.........................DP..........K.EL..P.P............ANPGSE
  482-  541 (41.65/10.71)	LEK................VAA.QP.VPA..S.......WDKIVGT..DWS.........IVTTsdgkkyyydnkQKV..........S.SWQLP.P.EVAELN.K...NADSGS
  607-  656 (45.47/12.41)	SSP................LAT.PS.STA..S.........ELNGSkpADG.........APKG...........QQG..........SiNGEKP.K.DNNGNG.N...MSDSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     369.02|      59|      66|     661|     719|       2
---------------------------------------------------------------------------
  661-  715 (83.75/47.82)	..............EEHGPSKEDCIREFKEMLKE............RGVAPFS.KWEKELPKLVFDPRFKAI.P..S...HSTRRTIF
  716-  783 (71.42/39.67)	DHFV..rtradeerKEKRAAQKAAVEAYKQLLEE..........asEDIDPKT.GYQEFKRKRGTDPRFEGL....D...RKEREALF
  784-  846 (74.05/41.41)	KEKV......raieEKVQSVRNALITDFKSMLRE...........cKDIISTS.HWTKVKEHIRSDPRYKAV....K...HEERENVF
  847-  900 (24.94/ 9.00)	NEYIaelksaerevEQAAKAKVDEQAKLRE..RE............RETRKRKeREEQEMERVKLKIR....................
  902-  952 (52.63/27.28)	.....................KDAVSSYQALLVE............IIKDPKA.SWTESKPKLDKDPQGRALnPdlG...QGDAEKLF
  954- 1023 (62.23/33.61)	DH.V.........kDLY....ERCVRDFRALLSEvitqeiaarttdEGKTAIS.SWSEAKGLLRSDPRYNKV.S..SkdrESIWRRYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.13|      16|     123|     424|     447|       5
---------------------------------------------------------------------------
  424-  447 (25.28/29.49)	HPTGH.GNqvndqledKRSTGIQDS
  549-  565 (24.54/12.09)	HDAGTvGN........KGETGVEIS
  566-  576 (19.32/ 7.99)	TPAI..............QTGGRDS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05513 with Med35 domain of Kingdom Viridiplantae
Unable to open file!