<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05510

Description Uncharacterized protein
SequenceMDSTVDELSASYKEFVTAALAVMEAREQSGGQKTAATDLALESFKQRWELFRVACDHAEELVESIRQRIGSECLVDEATGSSSSAPASAALAAPGIKPISAVRLEQMSKAVRWLVIELQHGAGGPSATGATGGGGGVANSAAGAGGQHGQGGLDPRFPEDGTQ
Length163
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.04
Grand average of hydropathy-0.210
Instability index54.41
Isoelectric point4.83
Molecular weight16670.27
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
cold acclimation	GO:0009631	IEA:InterPro
leaf senescence	GO:0010150	IEA:InterPro
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
root development	GO:0048364	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05510
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.79|      15|      15|     133|     147|       1
---------------------------------------------------------------------------
  133-  147 (26.53/14.59)	GGGGVANSAAGAGGQ
  149-  163 (29.26/16.81)	GQGGLDPRFPEDGTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.55|      39|      50|       6|      45|       2
---------------------------------------------------------------------------
    6-   45 (57.08/32.79)	DELSASYKEFVTAALAVMEAREQSGGQKTAATdLALESFK
   59-   97 (62.47/32.17)	EELVESIRQRIGSECLVDEATGSSSSAPASAA.LAAPGIK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05510 with Med32 domain of Kingdom Viridiplantae
Unable to open file!