<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05500

Description Uncharacterized protein
SequenceMNLHLYMFAALSVTYTLHSIFIQEKLSSLPEDIAKTYRYTATVKKATRKVLNFLQLQKSNLHEGMKSDFPMVEKLIRHLLGVIESKISRNAKMNTGYQLQNCGEQSQVGNAAPATGGKSASILQSRRITVAGTPPAHQQDSSNHFLGVASSCSISASGTLQSLPTNKLECLTPSPVAKSAATPSASPCALVKPIFISPVEKPVVAPVALPCDPVVSIPMDCDSIIAFLSHDNAATPAQDPIANGSNQATPKATTSASPLQTETVAGMAEDQVHGGSATPVGSRPINRLIDAIRSSSPAVLQKSANSIRSVLSIGDIVPPGKIGTILDCKFSHHQHGGFNAVDKMKRVFDHTELHSESLPFGSAMPFECDASGCGSSSERSMKRHKTQNANDALLEEVKSVNNVMIDTVISVTSDCGTDRNTSCGNGTVIKLSYSAVSLDPTLKELLATSEMSLVMPEKLFVPADYPNSSPVLIDDERDDQIRNKFSNISASVHVAFRRALSGLPEPWSIKETARAWDACVRKAVVEFAEEHGGGTISSMLGRWERCAAA
Length549
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.05
Grand average of hydropathy-0.162
Instability index56.12
Isoelectric point7.23
Molecular weight58665.08
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05500
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     324.90|     125|     141|      11|     147|       1
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   11-   63 (47.27/30.36)	...........................................................................................LSVTYTLHSIfIQEKLSSL.PEDIAKTYRYTATVKKATRKVLNFLQLQKSNLHE
   64-  206 (177.47/167.54)	GMKSDfPMVeKLIRHLLGVIESKISRNAKMNTGYQLQNCGEQsqvgnAAP.ATggKSASILQSRriTVAGTPPAHQQDSSNHFLGvasscsISASGTLQSL.PTNKLECLtPSPVAKSAATPSASPCALVKPIFISPVEKPVVAP
  208-  281 (100.16/70.05)	ALPCD.PVV.SIPMDCDSIIAFLSHDNAATPAQDPIANGSNQ.....ATPkAT..TSASPLQTE..TVAGMAEDQVHGGSATPVG............................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     185.68|      51|      84|     294|     344|       2
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  294-  344 (85.48/50.74)	SSSPAVLQK....SANS..IRS.VLSIGDIVP...PGKIGTILDCKFSHHQHGGFNAVDKM
  375-  431 (69.00/39.68)	SSSERSMKRhktqNANDalLEE.VKSVNNVMI...DTVISVTSDCGTDRNTSCGNGTVIKL
  437-  474 (31.20/14.29)	SLDPTLKEL....LATS..EMSlVMPEKLFVPadyPNSSPVLID.................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05500 with Med15 domain of Kingdom Viridiplantae
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