<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05496

Description Uncharacterized protein
SequenceMAVETGLLPPRMVCESLINSDMLEWERTQLWALTFKLVRKIIGGVDYKGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQHKQRCPVLEDQLVDLVVYAMERSETEEKFDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVLSLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKEYIPVPDINKPQSTHAFAMTCIWIHLNRKAHSDNSKLQIPIPHSLKLHHEFLQQSLRNKNLQMNDYKIALLCNAYSTNSECFTLPMGVLVETIYGNGNMRIPLPGTNCMASGSITPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHAKSSVALAPALVETYSRLLVYMEIESLGIKGFISQLLPTVFRSHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHSLAAVPQTNQNQLHLWFSVTAKPTLFQVFFKQNNVPQESRFNLKKNVEEEYRKWKSMTKENDIIAHFSAQGSAPLFLCLLWKMLLDTDHINQIGYRVLDRIGARALVAHVRTFADFLVYEFSTSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDFVKENSPEHWMQNDWHTKHMSYHKKYPEKLYFEGLAEQVNPPVQIQPQYLPIYFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEMHLRERTNLKRKLVHAIIGSLKDNRPLGWCLSDTYLKCAMNAREENPWIPDDTYYCKLIGRLVDNILLKVYIK
Length822
PositionTail
OrganismAmazona aestiva (Blue-fronted Amazon parrot)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Psittaciformes> Psittacidae> Amazona.
Aromaticity0.10
Grand average of hydropathy-0.063
Instability index38.77
Isoelectric point8.71
Molecular weight95179.07
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05496
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.43|      37|      95|     214|     276|       1
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  214-  253 (62.86/30.42)	LPVMKLFDLLYPEKEY.IPVPDINKPQSThafAMTCIWIHL
  311-  348 (63.56/45.23)	LPMGVLVETIYGNGNMrIPLPGTNCMASG...SITPLPMNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.14|      10|      32|     160|     169|       2
---------------------------------------------------------------------------
  160-  169 (18.69/10.88)	IFFVLFQFAS
  193-  202 (19.45/11.63)	LMWVLLQFIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.51|      33|      37|     720|     754|       3
---------------------------------------------------------------------------
  720-  754 (56.92/43.74)	LETLLDH..LGGLYkfHDRPVTY.LYNTLHYYEMHLRE
  758-  793 (50.59/31.96)	LKRKLVHaiIGSLK..DNRPLGWcLSDTYLKCAMNARE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.59|      22|      34|     573|     594|       4
---------------------------------------------------------------------------
  573-  594 (40.10/28.16)	SAGGQQLNKCIEILNDMVWKYN
  609-  630 (38.49/26.73)	SHEGNEAQVCYFIIQLLLLKPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.69|      21|      37|     465|     485|       5
---------------------------------------------------------------------------
  465-  485 (38.73/31.23)	WFSVTAKPTLFQVFFKQNNVP
  503-  523 (37.97/30.46)	WKSMTKENDIIAHFSAQGSAP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05496 with Med23 domain of Kingdom Metazoa
Unable to open file!