<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05495

Description Uncharacterized protein
SequenceMAVAGCMKMQRSMSEKALPLRPSSSSSSSRPAAARRALSVLCLEEDLSVGSWDSVPEEILPSSCRGEASSSDDDDDDESSSFEVPLDEALAAILPISSTVPGHHQQVAKFFEDLCSDEAARKTKGGGVKEEAALAKEEVRVLKEEMEALKRDRDAAVGELSEQKAELEQRVAELEDAAASEAILEEEEEEEEEEEGVDGLAWRAAEFSLVELRLATGNFGDAAKVSDGVYRGVLRSATVAIKLLPCRSPQGPPQFPRQVRALSRVRHPNLVTPIGLCPKPPALVYEYLPNGTLEDRLATSPPLTWHARTRIIGEICAALVSLHSAQPRPVIHGDVNPSNVLLNADLDTTCQLADAGGLVSSRLLLTATPSMAAAYADPELQGGEPTASSDVYAFGVLVLRLVTGAPPLGVAGKVEEALERGEMEEAVDRTAGEWPFAQAEKLMLLGLQCAEASARKRPDRMSQVWRVVGPLVKAAAAMPVPAPAAESPAGCLFGETHAPLYFTCPISQEVMRNPHMAADGFTYEAEAIKGWLDSGHDTSPMTKLALPHRHVTPNYALRSAIEDYMKKQQQHTTASQSVRSN
Length581
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.04
Grand average of hydropathy-0.268
Instability index60.34
Isoelectric point4.87
Molecular weight62437.78
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05495
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     148.28|      36|      36|     355|     390|       1
---------------------------------------------------------------------------
  201-  232 (31.22/12.38)	AwraaeFSLVELRLATGN..FGDAAKVSDGVYRG.......
  355-  390 (56.18/27.54)	A.....GGLVSSRLLLTATPSMAAAYADPELQGGEPTASSD
  393-  428 (60.87/30.39)	A.....FGVLVLRLVTGAPPLGVAGKVEEALERGEMEEAVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     253.62|      62|     382|      50|     111|       2
---------------------------------------------------------------------------
   50-  111 (107.19/55.25)	GSWDSVP..EE...IL..PS......SCRGEASSSDDDDDDESSSFEV..PLDEALAAILPISSTVPGHHQQVAKFF
  432-  493 (89.47/45.03)	GEWPFAQ..AEklmLL..GL......QC.AEASAR.KRPDRMSQVWRVvgPLVKA.AAAMPVPA..PAAESPAGCLF
  499-  553 (56.97/26.28)	PLYFTCPisQE...VMrnPHmaadgfTYEAEAIKGWLDSGHDTS......PMTK.LA..LPHRHVTP..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.82|      26|      43|     130|     160|       4
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  130-  160 (28.00/27.96)	EEAAlAKEEvrVLKEEMEalKRDRDAAVGEL
  175-  200 (41.82/22.36)	EDAA.ASEA..ILEEEEE..EEEEEEGVDGL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05495 with Med32 domain of Kingdom Viridiplantae
Unable to open file!