<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05490

Description Uncharacterized protein
SequenceMATAGIPSPRAGDSPEPSSSVGSDGEGGEREKVYLAVGREVAGSKALVLWALHKFPKDAAAFVLIHVYSRPKFLPIMGAKIPASQVGEQELIAHKKIELQRISDILDQNLLLCAQEKVQAEKMVVESDDVAERLVQLISEHRVTALVMGAAADKNYTKKMKALKSKKAQIVEQQADPFCRIWYICKGTLVYRRKTTPLSHEAMQEGRLKSGAQKFSVDRSTSLSETWCVSNTWLHKPNLEPHIERTSPNRSCDNEKEDVKEYDKPDNKIQHILRELESARQQAYEEKCSREKAERELFEASQKAQASENMYFGEVKQKNEIEEKLTTTMEEVERLTETTDELCAKLQEERKKKLALEKKIGHSDRIIKDLMLQRDKAVREVEALRAKKGESSATAEGTMHITQLSCSEIKEATNNFEQSLKVGESVYGSVYKGILRHTNVAIKKLNPEITQSQSQFNQEVEILSRVRHPNLVTLIGACKDTQALVYEYMPNGSLDDRLACKDNSKPLGWQLRARIVSDVCSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRMSTDEFRDTTTLYRHTHPKGSFVYIDPEYVMTGDLTPLSDVYSFGIVLLRLLTGRPGFGLLKDVQRAVEKGCLEAILDSSAGDWPAMQAEQLARVGLRCCEIRRKNRPDLKTEVWTVLEQMLQSASTRLCSLSFKSVSEDLGGVPSYFICPILQDVMREPLIAADGFTYEAEAIREWIDSGHHTSPMTNLELLHRDLLPNHALRSAIQEWLQTNAN
Length777
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.451
Instability index41.79
Isoelectric point6.63
Molecular weight87305.69
Publications
PubMed=20148030

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
plasma membrane	GO:0005886	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05490
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.89|      33|      34|     321|     353|       1
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  321-  353 (50.59/39.70)	IEEKLTTTMEEVERLTETTDELCAKLQEERKKK
  356-  388 (50.30/39.43)	LEKKIGHSDRIIKDLMLQRDKAVREVEALRAKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.04|      29|      89|     479|     507|       2
---------------------------------------------------------------------------
  479-  507 (51.89/30.68)	KDTQALVYEYMPNGS...LDDRLACKDNSKPL
  568-  599 (48.15/28.00)	RDTTTLYRHTHPKGSfvyIDPEYVMTGDLTPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.04|      23|      35|      80|     114|       3
---------------------------------------------------------------------------
   80-  104 (32.85/41.42)	KIPASQ.VGEQELIAHKKIELqrISD
  117-  140 (31.19/11.85)	KVQAEKmVVESDDVAERLVQL..ISE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.95|      34|     402|     250|     289|       5
---------------------------------------------------------------------------
  250-  289 (49.26/45.59)	RSCdnekeDVKEYDKPDNKIQhILRELESARQQAYEEKCS
  659-  692 (61.69/38.73)	RCC.....EIRRKNRPDLKTE.VWTVLEQMLQSASTRLCS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05490 with Med32 domain of Kingdom Viridiplantae
Unable to open file!