<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05489

Description Uncharacterized protein
SequenceMDAAAAHAAGAPAGEQQAAAPRAERLNQGVHHQLNLEGMRARAVGLYKAISRIIDDFNNIARTTPGGSPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENALILPVMLSSKLLPEMEIEETTKREQLLSGITNLPVPSQMEKLKARIDMIASACETAERVIAECRKTYGLGTRQGANLGPTLDKAQAAKIQEQEGLLRAAVNYGEGLRVPGDQRQPHSSLPSHLMEVLPSGDGAHNFGDNSGVYPKNTSTFTPNGVNTQGNAMQASGGLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQLHAQQQQQQQLRPSAASLLAQNTVSQLQDLQGQSQQKLQVPGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQSLQSQSILPQMQFGLTGGHPQRSHPTQMMNDQMFGMGSTNTSSMMGMQQQQQQQQQQGVYGNMQGGGQNLQQQGMVGLQNQQNQLQNQMQNPNFPQQRQQNQQ
Length562
PositionHead
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.04
Grand average of hydropathy-0.725
Instability index55.78
Isoelectric point9.39
Molecular weight61173.91
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05489
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     245.22|      43|      44|     310|     352|       1
---------------------------------------------------------------------------
  310-  347 (66.81/20.31)	...........................SGTNMM..NTPS......PQQHLTPQQ...QRQKL...MQAS....QQQQLHAQQQ
  348-  388 (44.98/11.20)	QQQQL....................rpSAASLLaqNTVS......QLQDLQGQS...Q.QKL....QVP....GQQQMQ....
  390-  416 (32.86/ 6.14)	......................................S......QAQALSQFQ...NRQ.....MQAA....RMQPGMSQSQ
  419-  487 (49.99/13.29)	QGNQLrshlgqftgaansamftaaqasSNSQMM.aNIPG......TMQSLQSQSilpQMQFG...LTGG....HPQRSHPTQM
  488-  539 (50.59/13.54)	MNDQM......................FGMGST..NTSSmmgmqqQQQ....QQ...QQQGVygnMQGGgqnlQQQGMVGLQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.05|       8|     153|      96|     105|       2
---------------------------------------------------------------------------
   96-  105 (12.75/17.24)	NKGfvVYPRN
  250-  257 (17.30/12.48)	NSG..VYPKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.96|      33|      46|     215|     249|       3
---------------------------------------------------------------------------
  215-  249 (56.35/35.60)	EGLRVPGDQRQPHSSLPSHLMEvlPSGDGAHNFGD
  264-  296 (58.61/31.84)	NGVNTQGNAMQASGGLGRSAPS..PGTAGTPNFEN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05489 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VNYGEGLRVPGDQRQPHSSLPSHLMEVLPSGDGAHNFGDNSGVYPKNTSTFTPNGVNTQGNAMQASGGLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQLHAQQQQQQQLRPSAASLLAQNTVSQLQDLQGQSQQKLQVPGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQSLQSQSILPQMQFGLTGGHPQRSHPTQMMNDQMFGMGSTNTSSMMGMQQQQQQQQQQGVYGNMQGGGQNLQQQGMVGLQNQQNQLQNQMQNPNFPQQRQQNQQ
211
562










Molecular Recognition Features






MoRF SequenceStartStop




1) QQQQGVYGNMQ
513
523