<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05488

Description Uncharacterized protein
SequenceMKTQWGVFANRLQLLVANSSTLKASKMSSEAFQQLILDEHNVYGENKHSLRKKFHPTVAFNPISSPNGRCLGASYSALWIPIDMYLEDCLHGSIAATNSIEILSGLVKALQAVNRSTWRDAFMALWIASVRLVQREREPIEGPVPHLETRLCMLLSIATLAVADIIEEADSCHNELNNHWKGKSAKDDLRKELMLSLQVLGDYESLLVPPPCIISAANLAASKAAMFVSAANISNGYMESGNDSTMNYSGNMRHLIVESCISRNLLDTSAYFWPGYINGHVNSMSHTLPSQLAGWSSFMNGAPLTQSLVNTLVSIPASSLAELEKLFEVAVNGSDEDKVSAATVLCGATLLRGWNFQEHTVRLVVKLLSHSDAADFSGRESQLMKHGPMLNVILTGISPVDYAPIFSFHGLVPELAAALMAICEVFGCLSPSVSWTLGTGEEISAHSVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNPRVLSASSLSKSRSSQKQLPVNSSPSSYNPIFMDSFPKLKLWYRQHQACLASTLSGLAHGTPVHNIVDSLLNLMFRKANKGSTSIGSLSGSSSISNSSGPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASIATIASYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLATGGSTLGRLPLPLAAFVSLTITYKLDKSSERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLVFSASRTVFHHNNDAVFQLLRSCFTSTLGMSSTSLCCCGGVASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILGEDILNLLMLSVKDIAETTVSRHRSDKLKRTKYGMRHGQISLAAAMTQVKVAASLGATLVWLSGGTTLVQSLFQEMLPSWFLSVQDLDQGGASGATVYKLGGHALAYFAVYSGMFAWGIDPTPVSRRRERVMRSHLEFLASALDGKISLGCDLSLWRAYVSGFLGLVVECTPCLLHEVDLKVLKKLSVGLQQLRENELAIAVLRGGGPKAMAAAAELILGS
Length1073
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.08
Grand average of hydropathy0.165
Instability index42.84
Isoelectric point7.77
Molecular weight115985.52
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05488
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     288.17|      69|      71|     576|     645|       1
---------------------------------------------------------------------------
  497-  571 (74.24/33.23)	SASSLSKSRSSQkqlpvNSSpssyN...PIFMDS..FPKLKLWYRQHQA..CLASTLSGLAHGT..PvHNIVDSLLNLmfrkAN...
  576-  644 (120.96/60.00)	SIGSLSGSSSIS.....NSS....G...PGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFP.RELATGLKDL....ADF.L
  647-  714 (92.96/45.65)	SIATIASYFSAE.....VTR....GvwkPAFMNGTDWPS.PAAN.LSMVEEHIKKIVAAT..GVDVP.R.LATGGSTL....GRLpL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.09|      26|     368|     465|     490|       5
---------------------------------------------------------------------------
  388-  412 (20.52/ 7.20)	.PMLNVILtG.............ispvDYAPIFS.......FHGLV
  413-  457 (23.77/ 9.37)	PELAAALM.AicevfgclspsvswtlgTGEEISAHsvFSNAFILLL
  465-  490 (47.80/25.41)	PPLEYCIM.G.................DGAPVGSQ..LTPEYLLLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05488 with Med33 domain of Kingdom Viridiplantae
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