<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05486

Description Uncharacterized protein
SequenceMGSAEAPAPVVDAGELERRVMAAVKASEARGDPPLLRAVEVARLVAGEGEGGGLGLPSAELAGILVSNLCFAHNSPSLWKLVSQAMASRLLCPLHVLALLTARVLPQRRAHPKAYRLYLELLKANVTSSSLSLQAGPNRDKITRSIDAALQLSKIYGVSGIDFGHVVILFVLVVITKLIDCVLEDCGFPSGMTEEQDSVYSIEGPQGMDLDVEGVSSAQQIEHREQLRRKNTVMAFEVVHMMAADRKIQAFLRLICHNMPDKFSALSQRLTLVEVHKMTLERLLAPSHKIDDLLMDIRRVSNVDYQPNNKRLVGVLGNMRSSGSLLGQLTGAGRAACWIIFDIYMENAIDGKHLSGISAIEILKETTKTVQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDARLCMLLALIPLAISAILKEETDASGAEGNKSLPRRLGLISSLQDLVQYSGLLVPPSSLVNVANAAASKAAIFMANYKAGGGNPSMISQSDSSTKAVGNMLHLIVEACISRNLIDTSAYLWSGYVVSSGHLMDTVLPQESPWLNFMQGAPLSDPLKNALIATPASSLAELDKLYHIALNGSEQEKSAAAKILCGETLVRGWNIQEHVVRLVVKLLSPPLPSDSSTQGSMSHYLSQKSTLNAILLGVSYVDTIHILSLYGMVPDVAAALMPLCEAFGSMSPPSNHRSTIFDETTVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLLLMHNSRIEFPNSSATGTNSSSDVDSFNEVPTQPIYIDSFPKLKAWYFQNQACIASPLSGLCNKNPVHQVANKILSMICRKMNKSGVVSGNLSSTSSSSVSGSSLSTSDDSYQRPIVPAWEFLEAVPFVLEAVLTACSHGRLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKTVSMNGTEWPSPGTALHSIEAEVKDILASAGVQIHSCYPRGVPPMLPLPMAALVSLTITFKLDKSLEYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRDKDAVAQLIQSCFSSFLLSSPSSRSDITASRGVGALMGESITDQGLQLPMAPGFIYLRTCRTFHDTYFVSETILKQVIDCSHKLANGWSSNGPSHLKSGRTPLSGAASMAYQVAMLGAGLLCIAGGPLVVQVLYEETLPTLLLSARKQVLKDPGPVSSTLQGYAMANMLFFCGSLLWGSEKTSPAMKMSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLLVKFVPSWLRDIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISIVVDTLLQ
Length1327
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.07
Grand average of hydropathy0.152
Instability index50.43
Isoelectric point7.53
Molecular weight143815.97
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05486
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.19|      36|     646|     543|     629|       1
---------------------------------------------------------------------------
  543-  578 (61.17/116.75)	VLPQESPWLNFMQGAPLSDPLK....NALIATPASSLAEL
  640-  679 (54.02/15.04)	YLSQKSTLNAILLGVSYVDTIHilslYGMVPDVAAALMPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.08|      34|     646|      69|     110|       2
---------------------------------------------------------------------------
   69-  109 (47.40/48.39)	LCfaHNSPSLWKLVSQAMAsrlLCPLHVLALltARVL.PQRR
  255-  289 (56.67/31.03)	IC..HNMPDKFSALSQRLT...LVEVHKMTL..ERLLaPSHK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     159.97|      48|      71|     696|     766|       3
---------------------------------------------------------------------------
  696-  744 (82.75/48.14)	I..FDETTVYSVFSCAFlCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYL
  768-  799 (39.84/48.43)	VdsFNEVPTQPIYIDSF.PKLKAWYF...QNQACIA...............
 1297- 1325 (37.38/12.80)	....................LRSW..HEHDLALSLLERGGPQAISIVVDTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.84|      15|     640|     377|     391|       6
---------------------------------------------------------------------------
  377-  391 (28.20/15.81)	SWQE..TFKALWISALR
 1008- 1024 (23.01/11.56)	SWPSmpIIGALWTQKVR
 1025- 1036 (23.64/12.08)	RWHD...FIVL..SCMR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.16|      40|      47|    1139|    1185|       8
---------------------------------------------------------------------------
 1141- 1185 (59.76/44.36)	RTPL...SGAASMAYQ.VAMLGAGLLCiagGPLVVQvlYEETLPTL...LLS
 1187- 1233 (59.40/27.19)	RKQVlkdPGPVSSTLQgYAMANMLFFC...GSLLWG..SEKTSPAMkmsFLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.52|      23|     116|     948|     974|      11
---------------------------------------------------------------------------
  948-  974 (40.23/33.52)	DILASAGVQI...HSCYPRGvppmLPLPMA
 1067- 1092 (37.29/20.34)	DITASRGVGAlmgESITDQG....LQLPMA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05486 with Med33 domain of Kingdom Viridiplantae
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