<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05484

Description Uncharacterized protein
SequenceMGNPDRSAARRQQQLAPYRLKCDKEPLNNKLGPPDFYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQISHFCKPDTVVRCKEALKKRLRAINESRAQKRKAGQVYGVPLSGSLLIKPGVYPEQRQCNEDTRRKWAEALAQPNKRLRLLSEHVPHGYRRKTLFDVLTRCNIPLLRATWFVKVTYLNQPQVRPTSSSISTGASDNQRSNQWTKDVVEYLHQLLDEFCLKEVPPSLKEQSSPGLISGATQVKIKNEAPSAGGDNEEPLVHFKWWYMVRLVQWHLTEELLVPSVLTEWLYCQLQERDSIEALELLLPIVLGLVETITLSQTYVRMFVDILVRRLGDASLVENTKRSSICSVIAQLLRYMVLAVPDTFVSLDCFPLPSFVAPDVYGRGALLKITGGGEISNSKRPDVYRYLSCGYAVCSIQRRASDLATVANPNLQARGAAKVVQALDKALVTGNLTMAYCSLFNDLSDALMEERWMKEVSPCLQSSLMWIGTVELSLICSVFFLCEWATCDYRDCRTSPCQDVKFTGRRDLSQIHMAVSILKSKMSELNNLSRSKSSSRIAVSNIGKGSVLNDASLAATTVNDSSGLRSNTKNLEEKKERKDTFESPGPLHDIIVCWLDQHEVSSAAGLKRVDVLIIELIRSGVFYPQAYVRQLIISGLTDKSGTLLDMDRKRRHHRILKQLPGSSLFDIIDEDVLAEEQQLHETMFIYSSERRLVLSELSSGQSFDANNRGEYTSSSCFRKESDLSVASGGPNHGSLPEQVEDVKVLVSSLLCFIYPQPVESEHCEIKMNFQGSSTSTLTQVDTGEAKYGCEDCMRAKGQKLDERASPFQAFPLIQSDEEDVWWVKKGSELHESLKAEPAKSIKQTSRGRAKVIRKTQNLAQLATARIEGTQGEASTSHLCESKLSCPHHKSSTGGDNAKDADHTRITNLAEVGKSLKKLRLLERRSISVWLLKSIRQLVEGNEMTACKASNSLSSFSSQPDEKTVSKWRLGDEELMSILYIVDTCCDLVSGARFLVWLLAKIRGGMATLGQIGRSATHMKNRENQICQVGEALVFSSLLRYENILLATDLLPEVLNASMNRHFVLATARHPASAGFAYTRYFLKKYRDVASVVRWEKNFRTTCDQRLLAELDNGRSIDGDLVSSSGVSAGEEIDEQVRQKLNGRGSRIVPNMKEIVQRQAEEIQRNLKDKKIPAVPKSPSFEKEDSYQIAHDTVLGLVECIRQNGGAGPDGDPSAVASAVSAVVVNAGNVIAKHLDFAGGNYYGVPSIGNSLSFVRHTLHIHISSLCLLKEALGDRFSRVFEVALAVEASSAVTAAFAPPKIQRNQFQPSPEAHDAYGNHTNELLSTSGKGFVGRTAKVAAAISAVVVGAIVHGAVSLERMIAVLKIKDGLDILQLVRGLRTSTNGVSRSTGTFKMENSVEVFVHWFRILLGNCRTVFDGLIADILGESYVLALSRLQQKLPLTVVFPPAYSIFAMVRWRQYIFSREDAQVYQSLANAINDITRHQPFREICFRNTHQLYDLLAADVGDSEFAVMLEMHSSDKNLKQLFIPLRARLFLNALIDCKTPAVIQVDGSEPGEAKENELKLRLIQLLDTLQPAKFHWQWVELRLLLDEQALVAKTDSSEKVNKTSTPILPLLVEALRSLSPNSESFALSESEKGFTEIILSRLLARPDAAPLYSEVVHLLGKLQESLVVDVKWILQAQDALLGRKSTRQQLVTIAQRTGVSTKTMIWKPWGWSSLLSDVMANRTAKRKLEVTSIEEGEVVDDSADTKRPSKSSSHNVDRSVEATRSINKYITEKAFTELMLPCIDRSSAEVRGIFAGELVKQMGAISENIKAIVRNGTKHAGLVPSGNEVLSNKSSGRKGIRGGSPNIGRRATVDSTPPSASALQAVVWLRLQFIIRLLPVIMADRSMRHTLASAIQCLLGARIIYEDSDSPLPPTSSVSLRREVDSLLEPPLDVLLDRPSDSLFERLLCVYHALLGNFKPSWLKSKSVSKPNARAPRETPAFDNDVAVGLQSALDHMELPGTIRRRIQAAMPILPPSRHPCIQCQPPQLSLAALSPLQSSTSTAGPQQKNASLSWVPTNLSSRSKAGLPSQDPEMEVDPWTLLEDGTSCPSMSSGSNGTSGISGDHANLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2178
PositionKinase
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.242
Instability index48.18
Isoelectric point8.52
Molecular weight241189.03
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of development, heterochronic	GO:0040034	IEA:EnsemblPlants
regulation of radial pattern formation	GO:0090213	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05484
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     292.54|     103|     200|     390|     503|       3
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  328-  422 (55.45/34.30)	.......................................TITLSQTYVRMFVDilvrrLGDAS......LVEN.TKRSSICsviaqlLRYMVLAV..pdtfvsldcfplpSFVAPDvYgRGAllKITGGGEISNSKRPDVYRY
  426-  547 (160.77/96.16)	GYAVCSIQRRASDLATVANPNLQARGAakvVQALDKALVTGNLTMAYCSLFND.....LSDAL......MEERwMKEVSPC......LQSSLMWIgtvelslicsvfflcEWATCD.Y.RDC..RTSPCQDVKFTGRRDLSQI
  548-  619 (76.32/31.93)	HMAVSILKSKMSELNNLSRSKSSSRIA...VSNIGKGSVLNDASLAATTV.ND......SSGLrsntknLEEK..KERKDT......FES.....................................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.03|      15|     200|     897|     911|       4
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  897-  911 (26.13/20.16)	LATARIEGTQGEAST
 1100- 1114 (27.90/22.19)	LATARHPASAGFAYT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.75|      18|      19|    1588|    1605|       5
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 1588- 1605 (29.20/19.63)	DGSEPGEAKENELKLRLI
 1609- 1626 (33.55/23.88)	DTLQPAKFHWQWVELRLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.13|      22|      23|     276|     298|       6
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  274-  297 (34.81/26.60)	HfKWWYmVRLVQWHLTE..ELLVPSV
  298-  322 (31.33/18.14)	LtEWLY.CQLQERDSIEalELLLPIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.42|      20|      24|    1162|    1185|       7
---------------------------------------------------------------------------
 1166- 1185 (33.43/27.61)	EEI....DEQVRQKLNGRGSRIVP
 1188- 1211 (26.99/10.86)	KEIvqrqAEEIQRNLKDKKIPAVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.76|      11|      24|    1798|    1808|       8
---------------------------------------------------------------------------
 1798- 1808 (18.16/10.17)	VDRSVEATRSI
 1825- 1835 (18.60/10.60)	IDRSSAEVRGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.14|      15|      23|    1460|    1474|      16
---------------------------------------------------------------------------
 1460- 1474 (24.08/15.06)	ILGESY.VLALSRLQQ
 1481- 1496 (25.06/16.00)	VFPPAYsIFAMVRWRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.38|      18|      23|    1283|    1300|      17
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 1283- 1300 (31.58/21.51)	IGNSLSFVRH.TLHIHISS
 1308- 1326 (24.80/15.13)	LGDRFSRVFEvALAVEASS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.65|      18|     619|     229|     256|      20
---------------------------------------------------------------------------
  233-  250 (31.79/28.43)	LKEVPPSLKEQSSPGLIS
 2095- 2112 (32.86/ 7.13)	LSWVPTNLSSRSKAGLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.16|      38|     120|    1225|    1262|      25
---------------------------------------------------------------------------
 1225- 1262 (66.39/38.73)	AHDTVLGLVECIRQNGGAGPDGDPSAVASAVSAVVVNA
 1348- 1385 (64.77/37.61)	AHDAYGNHTNELLSTSGKGFVGRTAKVAAAISAVVVGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.46|      16|      25|    1501|    1516|      26
---------------------------------------------------------------------------
 1501- 1516 (27.30/16.98)	REDAQVYQSLANAIND
 1529- 1544 (28.17/17.75)	RNTHQLYDLLAADVGD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05484 with Med12 domain of Kingdom Viridiplantae
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