<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05483

Description Uncharacterized protein
SequenceMEETGAGGAVYRRWDTSGSGSRYSFRTSVSSLAEMDGEVVEEETLVNQQAEAAGAEDDRVFVAVPQEVKHGKSALLWALQNLAKDGARVVLAHVHCPSQMIPMMGAKIHYTRMNPEQVKDHREKERQKASEKLDEYVVMCTTLKVSCEKIMIDKDDVAKGLEELIALHGITKLVMGAASDKNYSKKLKTPKSKTSLRLMEAGAPSCKIWFTCKGILICTREANTTVPAVPPSPAPTVASTLSENSISSHMRSLTIHHTESEASSSNGSPKQGLNRSVTAVPRHTSRAAGSTPSRLFEPFKLNANSRPPRTPMSSLDSWDDFGRRSESSWYNLSRNGDATSVSESAMQHPLNESDDDRLSSPSHELESSGVDAEMYARLEEALRESQESKKEAFEESTKRRKADHELFSALHKAKELEKLYHHEIRQRKTIEETLLRQTQEIQEMTILRDTIYNDLHDAEEQKIILEQCVTKTKSTLESHEEKLATSKYLIEVLQADKVKLQQERDAAVTAAEELRQKNEQRISMPTEALNTEFSAFELEQATRCFDEALKIGKGGFGCVYKGSLRNTTVAIKLLHPESLQGQSEFNQEVAVLGRVRHPNLVALIGSCRETFGLVYEFLPNGSLEHRLACTNNTRPLTWQVRTRIIYEMCSALSFLHSNKPHPVVHGDLKPANILLDANLVSKLGDFGICRFLTQSNASATTTLHRTTTPRGTFAYMDPELLSTGEITPRSDVYSFGIIILQLLTGRPPQKIAEVVEDAVVNRDLHSILDPSAGSWPFVQANQLAHLGLRCAEMSRRRRPDLARDVWMVVEPLMKAASLTAGRPTFAAASRGEASTPSYFVCPIFQELMNDPHIAADGFTYEAEAIRGWLDSGHDTSPMTNLKLAHRELTPNRGLRSVILEWQQQQRQQELDEDWR
Length915
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.501
Instability index49.02
Isoelectric point6.19
Molecular weight102214.37
Publications
PubMed=20148030

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05483
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     173.03|      54|     543|     285|     348|       1
---------------------------------------------------------------------------
  285-  348 (81.50/70.30)	SRAAGSTPSRLFEP.FKLNANSrpPRTpmssldSWDDFGRRSES..SWynLSRNGDATSVSESAMQH
  829-  885 (91.53/52.81)	SRGEASTPSYFVCPiFQELMND..PHI......AADGFTYEAEAirGW..LDSGHDTSPMTNLKLAH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.16|      19|     543|     189|     208|       2
---------------------------------------------------------------------------
  189-  208 (30.70/22.57)	TPKSKTS......LRLMeAGAPSCKI
  727-  751 (29.45/16.70)	TPRSDVYsfgiiiLQLL.TGRPPQKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.58|      35|      50|     352|     387|       3
---------------------------------------------------------------------------
  352-  387 (54.15/33.68)	ESDDDRLSS..PSHELESSgVDAEMYAR..LEEA.LRESQE
  401-  440 (45.43/23.58)	KADHELFSAlhKAKELEKL.YHHEIRQRktIEETlLRQTQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.98|      35|      52|     525|     561|       8
---------------------------------------------------------------------------
  525-  561 (55.05/44.28)	PtEALNTEfSAFELEQA....TRCFDEALKIG..KGGFGCVYK
  576-  616 (51.93/32.21)	P.ESLQGQ.SEFNQEVAvlgrVRHPNLVALIGscRETFGLVYE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05483 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SHMRSLTIHHTESEASSSNGSPKQGLNRSVTAVPRHTSRAAGSTPSRLFEPFKLNANSRPPRTPMSSLDSW
2) WYNLSRNGDATSVSESAMQHPLNESDDDRLSSPSHELESSGVDAEMYARLEEALRESQESKKEAFEESTK
248
329
318
398










Molecular Recognition Features






MoRF SequenceStartStop




1) GAVYRRW
8
14