<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05480

Description Uncharacterized protein
SequenceMPMLACLLGTNRAVQVPMFAPPASLQPPAPGQLPRPSAPFPGAMTPNLPGSIRSPFPVPPRTSNILYGSNPQQGNLDASASKLDAPSASEASPHTMQSLPASGPEVFGAVGGFVPGQRSSNLSAPPSLLGRPVAPSASSLPQTSPSGAAPGAVPQTTQQQFYPSYPSAPGIVPPQPLWGYPPHPTSFLQSPFQSYPPGPLGPLGRPMVGTSAVTTSVTNIQPPGVTTIGGDPKELPPANPGSEQPLHTSAVPHPTGHGNQVNDQLEDKRSTGIQDSDAWSAHKTEAGVLYYYNALTGESTYQRPPGYMGELEKVAAQPVPASWDKIVGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGSLKGNSSLHDAGTVGNKGETGVEISTPAIQTGGRDSLPLRQAVASASPSALDLIKKKLQDAGASSLSSPLATPSSTASELNGSKPADGAPKGQQGSINGEKPKDNNGNGNMSDSSSDSDDEEHGPSKEDCIREFKEMLKERGVAPFSKWEKELPKLVFDPRFKAIPSHSTRRTIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEDIDPKTGYQEFKRKRGTDPRFEGLDRKEREALFKEKVRAIEEKVQSVRNALITDFKSMLRECKDIISTSHWTKVKEHIRSDPRYKAVKHEERENVFNEYIAELKSAEREVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDAVSSYQALLVEIIKDPKASWTESKPKLDKDPQGRALNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITQEIAARTTDEGKTAISSWSEAKGLLRSDPRYNKVSSKDRESIWRRYADDMARKLKQSDTEKLDTDGRQQRRSSDPPRRR
Length884
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.850
Instability index52.79
Isoelectric point8.82
Molecular weight97031.35
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05480
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      62.86|      15|      16|     442|     456|       2
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  455-  471 (20.70/ 7.83)	ADgaPKGQQGSINGEKP
  482-  496 (19.79/ 7.16)	DS..SSDSDDEEHGPSK
  746-  757 (22.38/ 9.05)	KD..PKASWTE...SKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     320.01|      57|      68|     500|     556|       5
---------------------------------------------------------------------------
  500-  549 (75.58/48.62)	.................IREFKEMLKE............RGVAPFSKWEKELP........................................KLVFDPRFKAI.P..SHSTRRTIFDHFVR
  550-  617 (71.23/45.33)	TRADEERkekraaqkaaVEAYKQLLEE..........asEDIDPKTGYQEFKR........................................KRGTDPRFEGL....DRKEREALFKEKVR
  618-  680 (69.11/43.73)	..AIEEK..vqsvrnalITDFKSMLRE...........cKDIISTSHWTKVKE........................................HIRSDPRYKAV....KHEERENVFNEYIA
  681-  786 (39.54/21.35)	ELKSAER.eveqaakakVDE.QAKLRE............RERETRKRKERE..eqemervklkirrkdavssyqallveiikdpkaswteskpKLDKDPQGRALnPdlGQGDAEKLFRDHVK
  787-  851 (64.55/40.28)	DLY..ER.........cVRDFRALLSEvitqeiaarttdEGKTAISSWSEAKG........................................LLRSDPRYNKV.S..S.KDRESIWRRY..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     379.31|      80|      95|      62|     141|       6
---------------------------------------------------------------------------
   62-  116 (78.86/32.79)	..................................................TSNILYG...SNP.QQGNLDASASKL........DAPSASEASPHTMQSLPASGPEVF..G.AVGGFVPG
  117-  198 (97.67/42.39)	QRSSNLSAPPSLLGRP.VAPSA..SSLP.......qtspsgaapgavpqtTQQQFYP...SYP.S....................APGI..VPPQPLWGYPPH.PTSFlqS.PFQSYPPG
  199-  267 (63.78/25.10)	........PLGPLGRPmVGTSAvtTSVT................niqppgVTTI..G...GDP.KE..LPPANPGS........EQPLHTSAVPH.........PTGH..GnQVNDQLED
  268-  336 (73.95/30.29)	KRSTGI.................................qdsdawsahktEAGVLYY...YNA.LTGE...STYQR........PPGYMGELEKVAAQPVPASWDKIV..G.TDWSIVTT
  348-  451 (65.06/25.76)	QKVSSWQLPPEVAELN.KNADS..GSLKgnsslhdagtvgnkgetgveisTPAIQTGgrdSLPlRQAVASASPSALdlikkklqDAGASSLSSPLATPSSTAS..ELN..G.........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05480 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGASSLSSPLATPSSTASELNGSKPADGAPKGQQGSINGEKPKDNNGNGNMSDSSSDSDDEEHGPSKEDCIREFK
2) AKAKVDEQAKLRERERETRKRKEREEQEME
3) IVPPQPLWGYPPHPTSFLQSPFQSYPPGPLGPLGRPMVGTSAVTTSVTNIQPPGVTTIGGDPKELPPANPGSEQPLHTSAVPHPTGHGNQVNDQLEDKRSTGIQDSDAW
4) PMFAPPASLQPPAPGQLPRPSAPFPGAMTPNLPGSIRSPFPVPPRTSNILYGSNPQQGNLDASASKLDAPSASEASPHTMQSLPASGPEVFGAVGGFVPGQRSSNLSAPPSLLGRPVAPSASSLPQTSPSGAAPGAVPQTTQQQFYPSYPSA
5) QLPPEVAELNKNADSGSLKGNSSLHDAGTVGNKGETGVEISTPAIQTGGRDSLPLRQAVASA
430
693
171
17
354
504
722
279
168
415










Molecular Recognition Features






MoRF SequenceStartStop




1) GKKYY
2) LIKKKL
339
422
343
427