<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05478

Description Uncharacterized protein
SequenceMYQRMTCSLGSICLFPHHTARARESGHLLVPPCFYLPCRLGLQQQTLTVQGARASPPSPSSSPLPGYSPRSPHPEVERMFMRGGSGRSSNGSGTNRSASLREIDEEAATISEPEEDNDSGGKLHVAVGKDLKDSRSSLIWAAGNLLHGGDLRLVLLHVHQPAERIMNGLCKVPASHLEEKELRAYRRIEKDDMDALLNQYLNFCRISLKVQAETLVIEKNTPAHGIIELIDKYHITKLVMGTSSVSVKRNIPKSKVAASVHLQAKPYCQIFYVSKETLACSREATQLSVKPESPRSSCASSLSDQSEFPARSASLPPGHPGFLGSADQEALPRRSNSVSYPLSGSIVDSVENLSLARRQSIDMTSTVFSPNSSQQSTVGSSLDLKDLDSMDGSPTPVSIAISEHQHSMVETVIQNEVFEQLHRVRNELERSRKEASEGRQKAEKDLYEASMKFRARENSLCREKKEVEERLTREKAGLEKEHLNICNELQKANGKRAELENKLLQANCRIEELQQLQGELQCEKDHAVREAEEMRQINGNIVFGSTGAVALTEFSYTEIKEATSDFDDSKKIGHGGCGSVYKGFLRHTTVAIKKFNREGTTGEKEFNDEVETLSRMRHPNLVTLIGVCREAKALVFEFMSNGSLEDCLQCKNQTHPLSWKMRIRIAADICIGLIFLHSNKPKGIAHGDLKPDNVLLDASFVCKLADFGISRPLNLTNTTVTPYHRTNQIKGTMGYMDPGYIASGELTAQYDVYSFGVVLMRLLTGKNPLGLPNEVEAALSNGLLQDIMDASAGDWPPEYTEELARLALRCCRYDRKKRPDLANEAWGVLQAMINYPDDKSATPSFFICPMTQEIMRDPHIAADGFTYEGEAIKDWLQRGHKMSPTIYLDLAHHELIPNNALRFAIQEWQMQQKP
Length914
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.471
Instability index45.59
Isoelectric point6.45
Molecular weight101749.35
Publications
PubMed=20148030

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05478
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     145.98|      40|      42|     454|     494|       1
---------------------------------------------------------------------------
  414-  444 (39.91/22.03)	...............QNEVFEQLHRVRNEL..ERSR.KEASEGRQKAEK
  454-  494 (64.22/44.74)	RAR.ENSL....CReKKEVEERLTREKAGL..EKEH.LNICNELQKANG
  496-  539 (41.84/23.75)	RAElENKLlqanCR....IEE.LQQLQGELqcEKDHaVREAEEMRQING
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.11|      20|      41|     246|     265|       3
---------------------------------------------------------------------------
  246-  265 (33.08/24.42)	SVKRNIPKSKVAASVHLQAK
  288-  307 (35.03/26.35)	SVKPESPRSSCASSLSDQSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.91|      26|      42|     549|     586|       4
---------------------------------------------------------------------------
  549-  574 (42.68/48.34)	VALTEFSY...TEIKEATSDFDDSKKIGH
  590-  618 (38.23/16.68)	VAIKKFNRegtTGEKEFNDEVETLSRMRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.58|      41|      48|     727|     774|       5
---------------------------------------------------------------------------
  679-  724 (59.04/34.04)	NKPKGiAHGDLKPDNVL...LDASFvcKLADFGISRPLNLTNTtvTPYH
  727-  770 (68.54/60.15)	NQIKG.TMGYMDPGYIAsgeLTAQY..DVYSFGVVLMRLLTGK..NPLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.09|      23|      42|     345|     367|       7
---------------------------------------------------------------------------
  325-  338 (16.68/ 6.78)	....SADQEALPRR.....SNSV
  345-  367 (37.33/24.27)	SIVDSVENLSLARRQSIDMTSTV
  376-  395 (29.08/17.28)	STVGS..SLDLKDLDSMDGSPT.
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05478 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IDMTSTVFSPNSSQQSTVGSSLDLKDLDSMDGSPTPVSIAISEHQH
2) TLTVQGARASPPSPSSSPLPGYSPRSPHPEVERMFMRGGSGRSSNGSGTNRSASLREIDEEAATISEPEEDNDSGGKLHVAV
361
46
406
127










Molecular Recognition Features






MoRF SequenceStartStop




NANANA