<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05477

Description Uncharacterized protein
SequenceMDAAAAHAAGAPAGEQQAAAPRAERLNQGVHHQLNLEGMRARAVGLYKAISRIIDDFNNIARTTPGVTASDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENASILPVMLSSKLLPEMEIEETTKREQLLSGITNLPVPSQMEKLKARIDMIASACETAERVIAECRKTYGLGTRQGANLGPTLDKAQAAKIQEQEGLLRAAVNYGEGLQVPGDQRQPHSSLPSHLMEVLPSGDGAHNFGDNSGVYPKNTSTFTPNVVNTQGNAQCRYCFLQASGGLGRSAPSPGTAGTPNFENVSTPPMPYADSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQLHAQQQQQQLRPSAVGLLTQNTVSQLQDLQGQSQQKLQVPGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHPGQFTGAANSAMFTAAQASSNSQMMTNIPGSMQSQSILPQMQFGLTVFGMGSTNTSSMMGMQQQQQQQHQQGVYGNVQGGGQNLRQQGMVGLQNQQNQLQNQMQNPNFPQQRQQNQQ
Length546
PositionHead
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.04
Grand average of hydropathy-0.659
Instability index52.38
Isoelectric point9.12
Molecular weight59361.89
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05477
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     147.75|      33|      33|     480|     512|       1
---------------------------------------------------------------------------
  354-  389 (31.24/ 6.45)	QLRPSAVG...L.......L....TQNTvSQLQ..DLQG....QSQQKlqvpgQQQ
  390-  425 (34.72/ 7.93)	MQYSQAQALSQ.........fqnrQMQA.ARMQ.pGMSQ....SQLNQ.....GNQ
  475-  500 (43.69/11.73)	TVFG..............mG....STNT.SSMM..GMQQ....QQQQQ.....HQQ
  501-  546 (38.09/ 9.36)	GVYGNVQGGGQNlrqqgmvG....LQNQ.QNQLqnQMQNpnfpQQRQQ.....NQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.65|      32|      33|     249|     281|       2
---------------------------------------------------------------------------
  249-  281 (53.45/28.22)	SGVYPKNTSTFTPNVVNTqGNAQCRYCFLQASG
  288-  315 (45.96/20.13)	....PSPGTAGTPNFENV.STPPMPYADSPRSG
  318-  341 (39.25/16.17)	MMNTPSPQQHLTPQ........QQRQKLMQAS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.32|      25|      31|      38|      62|       4
---------------------------------------------------------------------------
   38-   62 (42.19/36.28)	GMRARAV.GLYKAIS....RIIDDFNNIAR
   66-   95 (31.13/24.67)	GVTASDVlGQFSMVSmelfNIVEDIKKVNK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05477 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FGMGSTNTSSMMGMQQQQQQQHQQGVYGNVQGGGQNLRQQGMVGLQNQQNQLQNQMQNPNFPQQRQQNQQ
2) LGRSAPSPGTAGTPNFENVSTPPMPYADSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQLHAQQQQQQLRPSAVGLLTQNTVSQLQDLQGQSQQKLQVPGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHPGQFTGAANSAMFTAAQASSNSQMMTNIPGSMQSQS
3) VNYGEGLQVPGDQRQPHSSLPSHLMEVLPSGDGAHNFGDNSGVYPKNTSTFTPNVV
477
283
209
546
465
264










Molecular Recognition Features






MoRF SequenceStartStop




1) FPQQR
537
541