<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05474

Description Uncharacterized protein
SequenceMAIQEEGERAGSADAPLTVGLALGGSKSSTYVLQWALAKFASGKDKDENKSAPTFKLIHVLTPVLTVPTPLGNYPVDKVRPEIADTHAKEVQVQAQEMLLQCRNMCDENKVEVEVLLVKGNDVGDAISNLVAQYQIQVLVVGNTTSRCAFTRKSSRNKTSSKICKSVPSSCTTYIVSKDGLSSVYSPGLGSDTSDSQVHSGEMSPRSDLNDSSGRTLLGLPSLPRSNLASENLKSSSSSKHDGSFTLYDYLSGSASVYADQDRTITSCTDGESSISSKVQASDKVPTQGSSLQALMLSDKVPTQKNSLQGLMLSDSKDDVNTELEKLRLELRHIQGTYKLVQDESVDASHQVVELAAMRVEGKAQLRDIQSRVDKANDEVQEDKAHRCATEEVVTHFKDLVRAEVMQKNRLLIKASKDADQKSRLEELFVLRGNLYSTFTWEEIDNATSSFSESHKIGTGSNGTVYKGHLKHLDVAIKILHSDDSSSTKHFNQELDVLRRIRHPHLLMLLGALPDRGCLVYEYMENGSLADRLQCINGTQPIPWFHRFCIAWEIVSALVFLHSTKPNPIIHRDLKPENVLLDRNLVSKIGDVGLSTLVPLKDSSSSGTMYKNTGLAGTLFYIDPEYHRTGQVSVKSDTYALGMVILQLLTARSPIGLPELVERAVEDGQLMDVLDGSAGNWPAKEAYDLAHLGLSCLEMRSKDRPDLKNMVAVELERLKNIAGAASEPVPGPPSHFVCPILKEVMQDPCIAADGHTYERNAILMWLSKHELSPVTKALLPNKTLVSNHSLLSAISSWRSQGGGL
Length804
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.05
Grand average of hydropathy-0.311
Instability index39.08
Isoelectric point6.08
Molecular weight87987.77
Publications
PubMed=20148030

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05474
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.05|      15|      15|     282|     296|       1
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  282-  296 (28.77/18.01)	SDKVPTQGSSLQALM
  298-  312 (29.28/18.46)	SDKVPTQKNSLQGLM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     219.76|      69|     143|     461|     541|       2
---------------------------------------------------------------------------
  461-  541 (105.25/89.77)	SNGTVYK.....GHLKHLDVAikiLHSDDSSSTKHFNQELDV....LRRIRHPhllmlLGaLPDrgcLVYEYMENGSLADRLQCINGTQP
  605-  682 (114.52/67.66)	SSGTMYKntglaGTLFYIDPE...YHRTGQVSVKSDTYALGMvilqLLTARSP.....IG.LPE...LVERAVEDGQLMDVLDGSAGNWP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.33|      11|      95|     170|     186|       3
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  170-  186 (16.18/27.37)	SCTtyivskDGLSSVYS
  267-  277 (22.15/15.31)	SCT......DGESSISS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.56|      18|      20|     104|     121|       4
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   90-  107 (30.74/22.76)	EVQVQAQEMLLQCRNMCD
  108-  125 (28.82/20.86)	ENKVEVEVLLVKGNDVGD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.94|      20|     288|     142|     163|       5
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  142-  163 (30.91/28.65)	GNTTSrcAFTRKSSRNKTSS.....KI
  433-  457 (32.03/20.95)	GNLYS..TFTWEEIDNATSSfseshKI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.92|      20|     338|     344|     407|       7
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  315-  335 (30.02/14.10)	DSKDDVnTELEKLRLE....LRHIQ
  347-  370 (28.90/71.49)	DASHQV.VELAAMRVEgkaqLRDIQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05474 with Med32 domain of Kingdom Viridiplantae
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