<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05472

Description ATP-dependent DNA helicase
SequenceMFEQGNLFNIWSHAEGLKSQDKIKMLLDRQEELYERQSQLQALLEISKTSRDAASSAPSVAPEDWSGKFSWDSQADDIRFNVFGISSYRSNQREIINSIMSGKDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTNKEVEKLIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKIQFPSVPMIALTATATSKVQMDLIEMLHIPRCVKFVSTVNRPNLYYKVYEKSSVGKVVIDEIANFITESYPNKESGIVYCFSRKECEQVAKELRERGIAADYYHADMDSVAREKVHMRWSKSKSQVIVGTVAFGMGINKPDVRFVVHHSLSKSMETYYQESGRAGRDGLPSECVLYYRPGDVPRQSSMVFYENCGLQNLYDIVRYCQSKKSCRRGAFFQHFGEAVQECNGMCDNCASSIELKDIDATYHTKIIVSLLQDMQHNDQRATLLQLVDKFKTKWKHSGCSNEAVDLKKEEIEQLIVQLIIDRVLKEEFQHTAYTTNAYVALGPLWKLALQGNRPVKLTGAIHSQDTGGASKSTKRSQMSNLEAKLDDLRRTISSDNGGIFPHAVLSTQQISLLSSHKPTTIAELENLIGKVKADKYGSDIIEVMQSEIDGGKDSGENGAKRQKKDKDVVLVESSEEEA
Length702
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.07
Grand average of hydropathy-0.356
Instability index43.23
Isoelectric point7.24
Molecular weight78703.06
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
DNA helicase activity	GO:0003678	IEA:UniProtKB-EC
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05472
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.40|      20|      28|     649|     671|       1
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  649-  671 (28.32/28.37)	ENLIGKVKADKygsDIIEVMQSE
  680-  699 (33.07/22.20)	ENGAKRQKKDK...DVVLVESSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.36|      47|     197|     176|     236|       2
---------------------------------------------------------------------------
  184-  236 (78.85/88.04)	YVTPEKISKSkrFMSKLEKCHHAGRLSLvaidEAHCCSQW..GHDFRPD....YKNLGI
  382-  434 (76.51/50.63)	FVVHHSLSKS..METYYQESGRAGRDGL....PSECVLYYrpGDVPRQSsmvfYENCGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.27|      13|      31|     587|     599|       3
---------------------------------------------------------------------------
  587-  599 (23.46/17.18)	SQDTGG....ASKSTKR
  617-  633 (17.82/11.13)	SSDNGGifphAVLSTQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.02|      29|     113|     145|     175|       4
---------------------------------------------------------------------------
  145-  175 (46.03/36.76)	MGLTA.LGIPAYM.LTSTTNKevEKLIYKALEK
  259-  289 (46.00/30.36)	MDLIEmLHIPRCVkFVSTVNR..PNLYYKVYEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.98|      24|      31|     497|     520|       5
---------------------------------------------------------------------------
  497-  520 (42.44/33.15)	DMQHNDQRATLLQL.VDK.FKTKWKH
  529-  554 (29.54/20.78)	DLKKEEIEQLIVQLiIDRvLKEEFQH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05472 with Med34 domain of Kingdom Viridiplantae
Unable to open file!