<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05471

Description Uncharacterized protein
SequenceMASSSSAWVEWAAEYTKAAQADARPAHEWVARVAAAASAGDGEDVQFSAGLAEMLARVLLSGGGSGAAPAAAWKYAEAALAARLASPALLLALLSIRVIPHRLASPTAYRLYLELLRRHGFTLCFQIKGSNFKKITQSIDDNLNLSKIFGISTCEPGVFVVEFVLCILWQLVDTALDNEGLLELTPEKAAQWPTRPQDVSTFEGSLSEQMPEKIEKLQKMNSVTTIELIGNLLHDKVVNRILSLARENMKTQWGVFANRLQLLVANSSTLKASKMSSEAFQQLILDEHNVYGENKHSLRKKFHPTVAFNPISSPNGRCLGASYSALWIPIDMYLEDCLHGSIAATNSIEILSGLVKALQAVNRSTWRDAFMALWIASVRLVQREREPIEGPVPHLETRLCMLLSIATLAVADIIEEADSCHNELNNHWKGKSAKDDLRKELMLSLQVLGDYESLLVPPPCIISAANLAASKAAMFVSAANISNGYMESGNDSTMNYSGNMRHLIVESCISRNLLDTSAYFWPGYINGHVNSMSHTLPSQLAGWSSFMNGAPLTQSLVNTLVSIPASSLAELEKLFEVAVNGSDEDKVSAATVLCGATLLRGWNFQEHTVRLVVKLLSHSDAADFSGRESQLMKHGPMLNVILTGISPVDYAPIFSFHGLVPELAAALMAICEVFGCLSPSVSWTLGTGEEISAHSVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNPRVLSASSLSKSRSSQKQLPVNSSPSSYNPIFMDSFPKLKLWYRQHQACLASTLSGLAHGTPVHNIVDSLLNLMFRKANKGSTSIGSLSGSSSISNSSGPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASIATIASYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGVDVPRLATGGSTLGRLPLPLAAFVSLTITYKLDKSSERFLNLAGPALENLAASCPWPSMAIVAALWTQKKLLHFYPWHVIDIIMLLRRCCQPSGSRVWLSLLWWSVPCCSRNSLPPDIPVHQGLLYTWRRYT
Length1076
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.08
Grand average of hydropathy0.101
Instability index42.09
Isoelectric point6.66
Molecular weight117308.71
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05471
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     302.90|      71|      71|     824|     894|       1
---------------------------------------------------------------------------
  745-  823 (84.24/53.88)	SASSLSKSRSSQkqlpvNSSpssyN...PIFMDS..FPKLKLWYRQHQA..CLASTLSGLAHGT..PvHNIVDS..LLNLmfrkANKGST
  824-  894 (122.35/82.22)	SIGSLSGSSSIS.....NSS....G...PGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFP.RELATG..LKDL....ADFLPA
  895-  966 (96.30/62.85)	SIATIASYFSAE.....VTR....GvwkPAFMNGTDWPS.PAAN.LSMVEEHIKKIVAAT..GVDVP.RLATGGstLGRL....PLPLAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.30|      12|      19|      83|      94|       2
---------------------------------------------------------------------------
   83-   94 (21.07/ 9.69)	RLASPA...LLLALL
  102-  116 (17.23/ 6.68)	RLASPTayrLYLELL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.85|      12|      19|      10|      21|       3
---------------------------------------------------------------------------
   10-   21 (22.14/13.13)	EWAAEYTKAAQA
   28-   39 (20.72/11.82)	EWVARVAAAASA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.83|      16|      18|     310|     325|       4
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  310-  325 (30.27/16.18)	PISSPNGRCLGASYSA
  329-  344 (30.56/16.39)	PIDMYLEDCLHGSIAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05471 with Med33 domain of Kingdom Viridiplantae
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