<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05466

Description Uncharacterized protein
SequenceMPQHVRPDKFSALSQRLTLVEVHKMTLERLLAPSHKIDDLLMDIRRVSNVDYQPNNKRLVGVLGNMRSSGSLLGQLTGAGRAACWIIFDIYMENAIDGKHLSGISAIEILKETTKTVQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDARLCMLLALIPLAISAILKEETDASGAEGNKSLPRRLGLISSLQDLVQYSGLLVPPSSLVNVANAAASKAAIFMANYKAGGGNPSMISQSDSSTKAVGNMLHLIVEACISRNLIDTSAYLWSGYVVSSGHLMDTVLPQESPWLNFMQGAPLSDPLKNALIATPASSLAELDKLYHIALNGSEQEKSAAAKILCGETLVRGWNIQEHVVRLVVKLLSPPLPSDSSTQGSMSHYLSQKSTLNAILLGVSYVDTIHILSLYGMVPDVAAALMPLCEAFGSMSPPSNHRSTIFDETTVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLLLMHNSRIEFPNSSATGTNSSSDVDSFNEVPTQPIYIDSFPKLKAWYFQNQACIASPLSGLCNKNPVHQVANKILSMICRKMNKSGVVSGNLSSTSSSSVSGSSLSTSDDSYQRPIVPAWEFLEAVPFVLEAVLTACSHGRLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKTVSMNGTEWPSPGTALHSIEAEVKDILASAGVQIHSCYPRGVPPMLPLPMAALVSLTITFKLDKSLEYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRDKDAVAQLIQSCFSSFLLSSPSSRSDITASRGVGALMGESITDQGLQLPMAPGFIYLRTCRTFHDTYFVSETILKQVIDCSHKLANGWSSNGPSHLKSGRTPLSGAASMAYQVAMLGAGLLCIAGGPLVVQVLYEETLPTLLLSARKQVLKDPGPVSSTLQGYAMANMLFFCGSLLWGSEKTSPAMKMSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLLVKFVPSWLRDIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISIVVDTLLQ
Length1074
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.07
Grand average of hydropathy0.139
Instability index51.00
Isoelectric point8.09
Molecular weight116608.64
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05466
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.33|      22|      41|     578|     599|       1
---------------------------------------------------------------------------
  578-  599 (34.10/19.67)	VVSGNLSSTSSSSVSGSSLSTS
  620-  641 (36.23/21.40)	VLEAVLTACSHGRLSSRDLTTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     253.17|      56|      84|     806|     861|       3
---------------------------------------------------------------------------
  695-  785 (31.56/13.56)	............DILASAG..VQI.......HSCYPRGvppmLPLPMAalvsltitfkldKsleyihgiigqalencaggsswpsmpiiGA..LWTQKVRRWHDFIVLScmRSP
  806-  861 (96.33/56.85)	L....SSPSSRSDITASRG..VGAL..MG..ESITDQG....LQLPMA............P............................GF..IYLRTCRTFHDTYFVS..ETI
  891-  948 (71.38/40.17)	L....SGAASMAYQVAMLG..AGLLciAG..GPLVVQV....LYEETL............P............................TL..LLSARKQVLKDPGPVS..STL
  965- 1025 (53.90/28.49)	WgsekTSPAMKMSFLSRRPrvVGTH..MDfiAGVLDGH....ILLGCD............P............................GTwkAYV.SCFVFLLVKFV......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.72|      15|     128|     239|     257|       6
---------------------------------------------------------------------------
  239-  257 (20.68/18.76)	PSMisQSDSSTKavGNMLH
  372-  386 (31.04/14.95)	PPL..PSDSSTQ..GSMSH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05466 with Med33 domain of Kingdom Viridiplantae
Unable to open file!