<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05464

Description Uncharacterized protein
SequenceMQGSNKLNAGSSCNDKLPRVNWPHHASAIQSSSSKDDFLSSSFLFSLPTQRPNPEANCNSMISLRSAACKIQGPERLQVPWIEKAWRSVCNTQVACKSYLRPGLSAKVEDCAKDYTHTYATNSSYNTNRQDNVPRNMIPSQEGIHQRTESGILENNSSHGPTGINSCTRTYQSNHVVRADNIGTTNHCGFARTDAKSCQNVPVADNMCADDTLDAMDDDEIMASIDVDRIVMEHYEATNTHRGLASWQMSTPSGNKCNLTGLDENSLPQELSEICIHGCKLAFCPEAKYHVQEMKDQMLAICSELIDGSGELSPQDSEALRKQRAHLKKQTKLLEDYMARSTQDDERQRSHSMATASQGHHPPMTPSTSVMDNDRFQSQIYSRNEPVNSGSCYPPAPHPYMDSLNTPLTSVQRDYTRTNIDINYTEGSGDKKWSSKDFPWTKELEAHNKRVFGNHSFRPNQREIINATMYGSDVFVLMPTGGGKSLTYQLPALIDEGITLVVCPLVSLIQDQIMHLAQANIPAICLSANVEWTEQQRILRDLMSPSSTCTYKLLYVTPEKIAKSDALLRQLEILYSRGHLSRIVIDEAHCVSQWGHDFRPDYQHLGLLKQKFPETPVLALTATATASVKEDVVQALGLANCVVFRQSFNRPNLRYIVMPKTKKCLEDIDNFIRASHHKECGIIYCLSRMDCEKVAAKLREYGHKASHYHGSMDPLDRTEIQRQWSRDKINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMITQGVVEQETSMPRGGSLSSHRQALETHKENLLCMVSYCENDVDCRRLLQLIHFGETFDPSCCAKTCDNCMKEMRWIEKDVTTIARQLVELVMMTRPACSTSHILEVFRGSVNQNVKKNRHDTLSLHGGGKNLAKGEASRVLRHLVTEGILIEDVKKSDTYGLVSSVLKVNQMKVGGLRSGNHTIVLKFPTREAPLMGKLDESSTPQINKTAQRQSEVDENISSLLFETLKCLRSQIAESTAGCGVHHIFKNETLKEISSRVPRTKEELLEINGIGKVKLNKYGDSVLATIEDFLSHFPNASKRSSSSGSNEQNEAPKKRRGLSATNASGKCDGFEERTVQSKKCAAKTKNTKQGISDAASMVQDVRYIDLDLDGCEDVDDELCSSAQQPVASSRVLPKWPTAVTKGNSPVANLFEEFKYTK
Length1215
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.539
Instability index51.09
Isoelectric point7.49
Molecular weight135789.14
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05464
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     361.40|     119|     144|     675|     818|       1
---------------------------------------------------------------------------
  677-  813 (189.65/181.73)	HKE...CGIIYCLSRMDCEKVaAKLREYGHkashyhgSMDP......LDRTEIQRQW.SRDKINIICATVAFGMgINKP.....DVRFVIHHSLPKSI.EGYHQECGRAGrdGQRsscvlyyNYS..DYIRV.KHMITQGV.VEQETSMPRGGSLSS
  821-  959 (171.76/106.28)	HKEnllCMVSYCENDVDCRRL.LQLIHFGE.......TFDPsccaktCDNCMKEMRWiEKDVTTIARQLVELVM.MTRPacstsHILEVFRGSVNQNVkKNRHDTLSLHG..GGK.......NLAkgEASRVlRHLVTEGIlIEDVKKSDTYGLVSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     576.94|     185|     217|      89|     302|       2
---------------------------------------------------------------------------
   94-  299 (288.99/212.54)	VACKSYLRPGLSA...KVEDCAKDYT...HTYATNSSYNTNRQDNvpRNMIPSQEGIH..QRTESGILENN.......SSHGPTGINSCtrtYQSNHVVRADNIGTTnHCGFARTDAKSCQNVPVADNmCADDTLDAMD...DDEIMAsiDVDRIVMEHYEATNTHRGLASWQMST......PSGNKCNLTgldeNSLPQELSEicihGCKLAFCPeakyHVQEMKDQML
  306-  514 (287.95/162.71)	IDGSGELSPQDSEalrKQRAHLKKQTkllEDYMARSTQDDERQRS..HSMATASQGHHppMTPSTSVMDNDrfqsqiySRNEPVNSGSC...YPPAPHPYMDSLNTP.LTSVQRDYTRTNIDINYTEG.SGDKKWSSKDfpwTKELEA..HNKRVFGNHSFRPNQREIINATMYGSdvfvlmPTGGGKSLT....YQLPALIDE....GITLVVCP....LVSLIQDQIM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05464 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NSSYNTNRQDNVPRNMIPSQEGIHQRTESGILENNSSH
2) PNASKRSSSSGSNEQNEAPKKRRGLSATNA
3) QTKLLEDYMARSTQDDERQRSHSMATASQGHHPPMTPSTSVMDNDRFQSQIYSRNEPVNSGSCYPPAPHPYMDSLNTPLTSVQ
122
1092
330
159
1121
412










Molecular Recognition Features






MoRF SequenceStartStop




1) RVLPKWPT
2) VANLFEEFKYTK
1188
1204
1195
1215