<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05463

Description Uncharacterized protein
SequenceMGKRLQEEQERQMQLRRSQLRSDIAVQVHALHGGSSSSMPQAGRSGSPRGPSSQMTPQASGLVPNQRMVQWHPYTPNMQTDVMQEQTDAMTFLDQFLNFEPTENAPMAPGVQPGSAREVDLIEKMFRQIKSWNEAYFSKFMELDRGIVVQNLTEEKLSSLPEDIAKTYRYTATVKKATRKVLNFLQLQKSNLHEGMKSDFPMVEKLIRHLLGVIESKISRNAKMNTGYQLQNCGEQSQVGNAAPATGGKSASILQSRRITVAGTPPAHQQDSSNHFLGVASSCSISASGTLQSLPTNKLECLTPSPVAKSAATPSASPCALVKPIFISPVEKPVVAPVALPCDPVVSIPMDCDSIIAFLSHDNAATPAQDPIANGSNQATPKATTSASPLQTETVAGMAEDQVHGGSATPVGSRPINRLIDAIRSSSPAVLQKSANSIRSVLSIGDIVPPGKIGTILDCKFSHHQHGGFNAVDKMKRVFDHTELHSESLPFGSAMPFECDASGCGSSSERSMKRHKTQNANDALLEEVKSVNNVMIDTVISVTSDCGTDRNTSCGNGTVIKLSYSAVSLDPTLKELLATSEMSLVMPEKLFVPADYPNSSPVLIDDERDDQIRNKFSNISASVHVAFRRALSGLPEPWSIKETARAWDACVRKAVVEFAEEHGGGTISSMLGRWERCAAA
Length680
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.05
Grand average of hydropathy-0.329
Instability index59.24
Isoelectric point6.79
Molecular weight73419.40
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05463
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.43|      15|      21|     305|     325|       1
---------------------------------------------------------------------------
  305-  319 (29.72/ 9.45)	SPVAKSAATPSASPC
  328-  342 (27.71/16.20)	SPVEKPVVAPVALPC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     183.61|      57|      80|     121|     179|       2
---------------------------------------------------------------------------
  121-  179 (89.66/61.77)	LIEKMFRQIKSWNEAYFSKFMELDRGIVVQNLTEEklSSLPEDIAKTYRYTATVKKATR
  202-  258 (93.95/59.24)	MVEKLIRHLLGVIESKISRNAKMNTGYQLQNCGEQ..SQVGNAAPATGGKSASILQSRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.04|      32|      82|     404|     436|       3
---------------------------------------------------------------------------
   32-   48 (27.91/ 7.92)	HGGSSS...S.MP.....QAGRSGSP...........
  404-  435 (56.66/25.27)	HGGSATPVGS.RPINRLIDAIRSSSPAVLQK....SA
  485-  520 (47.48/ 9.75)	HSES.LPFGSaMPFECDASGCGSSSERSMKRhktqNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.45|      11|      24|     365|     375|       8
---------------------------------------------------------------------------
  365-  375 (20.00/11.83)	ATPAQDPIANG
  387-  397 (18.45/10.37)	ASPLQTETVAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05463 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MGKRLQEEQERQMQLRRSQLRSDIAVQVHALHGGSSSSMPQAGRSGSPRGPSSQMTPQASGLVPNQRMVQWHPYTPNMQTDVMQE
2) PAQDPIANGSNQATPKATTSASPLQTETVAGMAEDQVHGGSATPV
1
367
85
411










Molecular Recognition Features






MoRF SequenceStartStop




1) SQLRSDIAVQVHAL
18
31