<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05460

Description Uncharacterized protein
SequenceMDGGHGHGGHGQRQPLSPAISASAVLPHQRQMQLHQHPARPAIADLFTLYLGMNSKQRAEDPARETANKLQKRVSALSRDLPPRDEQFIPDFEQLRMPFPDQEQLQAVTESVLISFVLQCSSHAPKSEFLLFATRCLCARGHLRWDSLLPSLLSAVSSVEAPMAQGGAVTVGGPVSSSSSAIVAPSAPSFHASNPTSPLSAMNTIGSPTQSGIDQPIGANASPIKRTEFSTPGQLGTAARGDQSRRGEEISYLHHLSCRIILAGLESSLKPATLAVIFQHMVNWLVNWDQRPHGVDEADTTQTWRIGRPVHEWMHLCLDVIWILVDEEKCRVPFYELVRSNLQFLENIPDDDALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSHSQQSSTPGAVFSPDMIGEAVADRTIELLRFTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNVSPQSILLDFISSSQTLRIWSFNTSIREHLNNDQLQKGKQIDEWWKQMTKASGERMIDFMNLDERAMGMFWVLSFTMAQPACEAVMNWFTSAGTDVIQGPNMQPNERIAMMRETCPLSMSLLSGLSINLCLKLAFQLEDSIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRMFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGHAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLNHSFALHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQHGHLVQELLSKAIKNLAFFIWTHELLPLDILLLALIDRDDDPYALRLVINLLERTELQQRIKAFCSSCSSEHWLKNQPPKRAELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSNFLAFHPLRFTFVRDILAYFYGHLPSKLIVRVLSVLGASIKTPFSESFTQYLGPSTICPPQEYFANLLLSLVNNVIPPLSSKSKSHPADASGNAGRTSFSKPHASAQAGGISNTDGQRAFYQNQDPGSYTQLVLETAAIEILSLPVSASQIVTSLVQLIAHVQAMLIQSNSGQGMSGGLGQNSGLPTSPSGGGAEAAGGNRANTSASGISANFVSRSGYSCQQLSVLMIQACGLLLAQLPPEFHMQLYSEAARIIKDCRWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNVVALLHSFFSNLPQEWLDSTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPHVEASEIADIIDFFHV
Length1554
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.08
Grand average of hydropathy-0.062
Instability index44.88
Isoelectric point6.86
Molecular weight173917.15
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05460
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.81|      15|      15|    1208|    1222|       1
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 1208- 1222 (29.91/19.63)	ESFTQYLGP..STICPP
 1224- 1240 (20.90/11.23)	EYFANLLLSlvNNVIPP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      13|      15|     388|     400|       2
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  388-  400 (24.35/13.21)	RFLSQSYPSIAGE
  406-  418 (25.28/13.99)	RYSPITYPSVLGE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.76|      16|      22|     436|     451|       3
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  436-  451 (32.25/21.26)	WERAL...RCLR.HALR.TTP
  456-  476 (20.51/10.60)	WRRVLlvaPCYRsHSQQsSTP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.54|      20|      22|    1494|    1513|       5
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 1486- 1511 (28.94/15.05)	RPvnsvamLRIAFRILGPLLPRLAFA
 1512- 1536 (28.60/14.78)	RP.lfmktLALLFNVLGDVFGKNSQA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.32|      23|     183|     842|     915|       6
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  893-  915 (42.71/99.20)	LLEQIMATSQHTWSEKTLRYFPP
 1082- 1104 (44.61/ 7.80)	LQQRIKAFCSSCSSEHWLKNQPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.48|      16|      22|      18|      39|       7
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   24-   39 (31.39/30.31)	AVLPHQRQMQLHQHPA
 1399- 1414 (30.09/12.73)	AQLPPEFHMQLYSEAA
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.68|      20|      23|     570|     592|      10
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  572-  591 (32.75/20.13)	DPRKVETTRKIISFHKEDKS
  593-  612 (32.93/18.38)	DPNNVSPQSILLDFISSSQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.36|      16|      20|    1157|    1176|      11
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 1157- 1176 (20.15/25.05)	VLAFYSNFLafhPLRFtFVR
 1178- 1193 (29.21/17.53)	ILAYFYGHL...PSKL.IVR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.94|      16|      22|    1422|    1442|      12
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 1422- 1442 (21.79/26.24)	WLADSSrpvkeLDSAVG..YALL
 1446- 1463 (23.15/13.35)	WASQDN.....TSTAIGnvVALL
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.44|      13|      15|    1031|    1043|      15
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 1031- 1043 (21.01/14.63)	QELLSKAIKNLAF
 1048- 1060 (21.43/15.09)	HELLPLDILLLAL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.90|      32|    1186|     153|     184|      18
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  153-  184 (52.71/32.05)	LSAVSSVEAPMAQGGAVTVGGP.VSSSSSAIVA
  199-  222 (33.96/17.99)	LSAMNTIGSPTQSGIDQPIGAN.AS........
 1354- 1373 (19.23/ 6.94)	.............GGAEAAGGNrANTSASGISA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05460 with Med23 domain of Kingdom Viridiplantae
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