<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05458

Description Uncharacterized protein
SequenceMTSSSPAPNPNPVPTPTPTPPPNPTPPSSANGAAASPPPKENQDGAAAGGGGAGGAGAGADAVAGAGTEAVDAAVGGGGGGGEAMEVDGGAGAGGGAGDVEVGAGGVAGRAQQASTPATVFRIRLKQTPASLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPPSCPRSLLVANFHGRITIWTQPTKGPVNLVRDSSSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSSSSNLKTFEEKFLTQHPQSSGWPNILCVCSVFSSGSVQLHWSQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIITKSGALHVAGVPLVNPSTVVVWEVMPGLGNGIQTTAKINATSPLPPSLNPPSWAGFAPLASYLFSLQDYLVSEGAQTRKQIDNEITDAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGGVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLEPVVLHPIFGSPSSFGGQPPMQTVWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQVVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSSIAPPAFSSSSCCLASVWHDTFKDRTILKIIRVLPPAILNVQTKVSSAVWERAIADRFWWSLMAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDTDFHCLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSNIEPDKMTVDPALLPSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGSSRSMVTSPTNSSPSPSNNQGTQGGVASSTGSSQMQEWVQGAIAKISNSADVSANAAPNPVSGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANAQKNPDSAMQKVQHFMNGKMEDTSSAASAVRSGLGAAKVEDGPATRGQLVLGAKGLEENPMGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSGLQHPLPVSQVGSSNIIIRLHFIDGTYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPSEEWHRRNMFGGPWSEPDDLGPLDNMPQLKIGACINPHLSNMEEDGDSNEGIQSLWPKKRRLSERDAAFGLKTSVGLGAYLGVMGSRRDVITAVWKTGLDGEWYKCIRCLRQTCAFAQPGVPNPANERESWWISRWTHACPMCGGSWVKVV
Length1304
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.07
Grand average of hydropathy-0.187
Instability index51.04
Isoelectric point6.31
Molecular weight139039.50
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05458
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     314.51|     126|     155|     829|     958|       1
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  829-  887 (60.84/36.86)	.......................................................................................................PALLPSIQGYVDAVLDLASHFIT.RLRRYASFCRTLAShAVGAS...SGSGSSRSMVTSPTNS
  888- 1047 (180.06/127.58)	SPSPSNNQGTQGGVASSTG..SSQMQewVQGAIAkISNSADVSANAAPNPVS..GRSS.FMPISINTGTFPGTPAVrligdchflhrlcqlllfcllfrrrqsPRLLANAQKNPDSAMQKVQHFMNgKMEDTSSAASAVRS.GLGAAkveDGPATRGQLVLGAKGL
 1048- 1120 (73.61/41.72)	EENPMGKSVRIGSGNAGQGytSDEVK..VLFLIL.VDLCRRTSGLQHPLPVSqvGSSNiIIRLHFIDGTYTVLPEV..........................................................................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.17|      10|     155|     168|     177|       2
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  168-  177 (22.93/10.08)	PSSNSSPPFW
  324-  333 (22.24/ 9.55)	PSQNSAQPRW
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.44|      30|     109|     453|     483|       3
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  453-  483 (47.32/24.97)	NfSAYVSPEAAAQSATTTT.....WGSGVTSVAFDP
  496-  530 (51.12/23.23)	E.GQYMSPYDPDEGPSITGwrvqcWESSLEPVVLHP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.64|      26|      41|      30|      70|       4
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   44-   70 (44.03/40.70)	DgAAAGGGGAGGAGAGADAVAGAGTEA
   72-   93 (36.53/ 9.03)	D.AAVGGGGGGGEAMEVDGGAGA....
   94-  114 (32.08/ 8.49)	......GGGAGDVEVGAGGVAGRAQQA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.57|      29|      61|     210|     238|       5
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  210-  238 (58.48/28.87)	WSPPSCPRSLLVAN.........FHGR.ITIWTQPTKGP
  264-  302 (46.09/21.27)	WLSGISPYRWLPANsssssnlktFEEKfLTQHPQSSGWP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.31|      29|     156|     637|     666|       6
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  637-  666 (49.85/28.14)	VDSYHVNvGSSIAPPAFSSSSCCLASVWHD
  795-  823 (51.46/25.41)	IESALIN.PSTLLPEPWQASSDMLSNIEPD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.79|      28|     377|       6|      42|       7
---------------------------------------------------------------------------
    6-   33 (58.89/30.60)	PAPNPNPVPTPTPTP..................PPNPTPPSSANGA
  367-  412 (45.89/11.80)	PLVNPSTVVVWEVMPglgngiqttakinatsplPPSLNPPSWAGFA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.15|      16|     379|     178|     193|       8
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  178-  193 (31.28/18.66)	IPIHILNPER.PTECSV
  569-  585 (25.87/14.12)	VPMPTTSDERsSSECSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.00|      39|      61|    1121|    1164|       9
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 1121- 1164 (63.84/50.76)	VEASLGPHMQNMPRPrGADAAGLllreLELQPPSEEWHRRN.MFG
 1184- 1223 (67.16/39.96)	IGACINPHLSNMEED.GDSNEGI....QSLWPKKRRLSERDaAFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.54|      46|     577|     670|     718|      12
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  670-  718 (80.32/49.67)	DRTILKIIRVLPPAILNVQTKVSSAVWERaiaDRFW...WSL...MAGVDWWDAV
 1253- 1304 (85.22/46.54)	DGEWYKCIRCLRQTCAFAQPGVPNPANER...ESWWisrWTHacpMCGGSWVKVV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05458 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GSGSSRSMVTSPTNSSPSPSNNQGTQGGVASSTG
2) MTSSSPAPNPNPVPTPTPTPPPNPTPPSSANGAAASPPPKENQDGAAAGGGGAGGAGAGADAVAGAGTEAVDAAVGGGGGGGEAMEVDGGAGAGGGAGDVEVGAGGVAGRAQQ
3) VWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECS
873
1
547
906
113
584










Molecular Recognition Features






MoRF SequenceStartStop




1) VFRIRLK
120
126