<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05456

Description Uncharacterized protein
SequenceMAVVSRARASPPSPSSSPLPGYSPRSPHPEVERMFMRGGSGRSSNGSGTNRSASLREIDEEAATISEPEEDNDSGGKLHVAVGKDLKDSRSSLIWAAGNLLHGGDLRLVLLHVHQPAERIMNGLCKVPASHLEEKELRAYRRIEKDDMDALLNQYLNFCRISLKVQAETLVIEKNTPAHGIIELIDKYHITKLVMGTSSVSVKRNIPKSKVAASVHLQAKPYCQIFYVSKETLACSREATQLSVKPESPRSSCASSLSDQSEFPARSASLPPGSIVDSVENLSLARRQSIDMTSTVFSPNSSQQSTVGSSLDLKDLDSMDGSPTPVSIAISEHQHSMVETVIQNEVFEQLHRVRNELERSRKEASEGRQKAEKDLYEASMKFRARENSLCREKKEVEERLTREKAGLEKEHLNICNELQKANGKRAELENKLLQANCRIEELQQLQGELQCEKDHAVREAEEMRQINGNIVFGSTGAVALTEFSYTEIKEATSDFDDSKKIGHGGCGSVYKGFLRHTTVAIKKFNREGTTGEKEFNDEVETLSRMRHPNLVTLIGVCREAKALVFEFMSNGSLEDCLQCKNQTHPLSWKMRIRIAADICIGLIFLHSNKPKGIAHGDLKPDNVLLDASFVCKLADFGISRPLNLTNTTVTPYHRTNQIKGTMGYMDPGYIASGELTAQYDVYSFGVVLMRLLTGKNPLGLPNEVEAALSNGLLQDIMDASAGDWPPEYTEELARLALRCCRYDRKKRPDLANEAWGVLQAMINYPDDKSATPSFFICPMTQEIMRDPHIAADGFTYEGEAIKDWLQRGHKMSPTIYLDLAHHELIPNNALRFAIQEWQMQQKP
Length843
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.487
Instability index44.90
Isoelectric point6.25
Molecular weight93925.49
Publications
PubMed=20148030

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05456
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     180.85|      46|      47|     345|     391|       1
---------------------------------------------------------------------------
  113-  160 (50.19/34.64)	.VHQPAERIMNGLCKvpaSHLEEKELRayRRIEKDDMDALL.......NQylnF....CR
  345-  391 (74.84/61.62)	EVFEQLHRVRNELER...SRKEASEGR..QKAEKDLYEASMKfRAR.ENS...L....CR
  395-  438 (55.82/39.48)	EVEERLTREKAGLEK...EHLNICNEL..QKANG.......K.RAElENK...LlqanCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     158.48|      42|      47|     636|     679|       2
---------------------------------------------------------------------------
  604-  629 (26.63/10.30)	................FLHSNKPKGiAH..GDLKPDNVL....LDASF
  636-  679 (70.30/43.97)	FGISRPLNLTNTtvTPYHRTNQIKG.TM..GYMDPGYIAS.GELTAQY
  684-  728 (61.55/33.22)	FGVVLMRLLTGK..NPLGLPNEVEA.ALsnGLLQDIMDASaGDWPPEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.84|      10|      18|     440|     449|       3
---------------------------------------------------------------------------
  440-  449 (16.74/10.33)	EELQQLQGEL
  461-  470 (18.09/11.74)	EEMRQINGNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.71|      28|      50|     248|     275|       4
---------------------------------------------------------------------------
  248-  275 (50.09/34.84)	SPRSSCASSLS...DQSEFPARSASLPPGSI
  298-  328 (44.61/30.13)	SPNSSQQSTVGsslDLKDLDSMDGSPTPVSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.91|      26|      41|     478|     515|       5
---------------------------------------------------------------------------
  478-  503 (42.68/40.00)	VALTEFSY...TEIKEATSDFDDSKKIGH
  519-  547 (38.23/13.76)	VAIKKFNRegtTGEKEFNDEVETLSRMRH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05456 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MAVVSRARASPPSPSSSPLPGYSPRSPHPEVERMFMRGGSGRSSNGSGTNRSASLREIDEEAATISEPEEDNDSGGKLHVAV
2) TSTVFSPNSSQQSTVGSSLDLKDLDSMDGSPTPVSIAISEHQH
1
293
82
335










Molecular Recognition Features






MoRF SequenceStartStop




NANANA