<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05455

Description Uncharacterized protein
SequenceMDAAAAHAAGAPAGEQQAAAPRAERLNQGVHHQLNLEGMRARAVGLYKAISRIIDDFNNIARTTPGGSPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENALILPVMLSSKLLPEMEIEETTKREQLLSGITNLPVPSQMEKLKARIDMIASACETAERVIAECRKTYGLGTRQGANLGPTLDKAQAAKIQEQEGLLRAAVNYGEGLRVPGDQRQPHSSLPSHLMEVLPSGDGAHNFGDNSGVYPKNTSTFTPNGVNTQGNAMQASGGLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQLHAQQQQQQQLRPSAASLLAQNTVSQLQDLQGQSQQKLQVPGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMFGLTGGHPQRSHPTQMMNDQMFGMGSTNTSSMMGMQQQQQQQQQQGVYGNMQGGGQNLQQQGMVGLQNQQNQLQNQMQNPNFPQQRQQNQQ
Length541
PositionHead
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.04
Grand average of hydropathy-0.746
Instability index52.74
Isoelectric point9.39
Molecular weight58888.25
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05455
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     256.75|      44|      45|     310|     353|       1
---------------------------------------------------------------------------
  310-  350 (72.28/19.37)	........SGTNMM..NTPSPQQHLTPQQQRQKLMQASQQQQL......HAQQQQQQ
  351-  388 (38.28/ 7.11)	QLR....pSAASLLaqNTVSQLQDLQGQSQ.QKL.QVPGQQQM......Q.......
  422-  462 (38.71/ 7.26)	QLR.....SHLGQF..TGAANSAMFTAAQ.......ASSNSQMfgltggHPQRSH..
  463-  495 (50.96/11.68)	.........PTQMM..N....DQMFGMGSTNTSSMMGMQQQQ.........QQQQQQ
  496-  539 (56.52/13.69)	GVYgnmqgGGQNL.......QQQGMVGLQNQQNQLQNQMQNPN......FPQQRQQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.05|       8|     149|      96|     105|       2
---------------------------------------------------------------------------
   96-  105 (12.75/15.12)	NKGfvVYPRN
  250-  257 (17.30/10.94)	NSG..VYPKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.07|      13|      33|     178|     190|       3
---------------------------------------------------------------------------
  178-  190 (25.10/13.81)	YGLGTR.QGANLGP
  213-  226 (21.97/11.11)	YGEGLRvPGDQRQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.77|      12|      26|     262|     273|       4
---------------------------------------------------------------------------
  262-  273 (22.85/11.44)	TPNGVNTQGNAM
  291-  302 (23.93/12.30)	TPNFENVSTPPM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05455 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VNYGEGLRVPGDQRQPHSSLPSHLMEVLPSGDGAHNFGDNSGVYPKNTSTFTPNGVNTQGNAMQASGGLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQLHAQQQQQQQLRPSAASLLAQNTVSQLQDLQGQSQQKLQVPGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMFGLTGGHPQRSHPTQMMNDQMFGMGSTNTSSMMGMQQQQQQQQQQGVYGNMQGGGQNLQQQGMVGLQNQQNQLQNQMQNPNFPQQRQQNQQ
211
541










Molecular Recognition Features






MoRF SequenceStartStop




1) QQQQGVYGNMQ
492
502