<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05441

Description "Uncharacterized protein, isoform B"
SequenceMDGNAQNMFHGNHQGDPYYRYDAAAAAAAAAAANPRAMGPPGGYPPRHRAPHPLQQQPQYPSYQPTAENLYGLGAADHQAAMGLGVGVGVGVGVGVGGMGDLSGWGAAPTGVPGQAAAYPGAGLGAYGHPQAAPPAQQQRQSNASAYRQHMPAYGQQEQQKLAPYGAQQGMMAGYGSQQPPTPQQQQQVQAQQQAQQVQQQQAQQVQQQQQSQQQARLPQHYPQAPGQHPLYPGVGAPAVQAGQPPTPQGYAHSPYGSPMQHQPGRGAPQHVGYGHSGLDPNQASAYGQHVPGAAPPGHHQQQLGAHQQQQLQSQQQAQQVQQQAQQQQQQPHVSLMQQQLPGAGLPPPHMGMPPSYGSHHQQQQQQQQAQQQQQQAAPPYMSKQAAAQLNSSPQYRAPFPQLSPQMSPRPPTMSPHPQMSPRPVGVSPAKPPAPQQAQAQQQVVQQPQQPSQHSIQGMVGLPSPRPQPPSSGAVGGAVGSGSKVPPPVAAPVNTLQALEQMVMPTQAHGLPPMDYPSAYRSAVGPRMPASPQQQQQQQHHQQWGSQHMAAMQQQQQAAAAQQQQQQAQQQAAAQQQQQQQQAAPQQQQAAMLQAQQQHHQQQMSMYGQAMGQQQQQQPQAPQQVVPPVAAQQQPPQQQQQQQQQQQQQQHQQQQQQSLNDQLQHSINDIVGGGNSSGSTTSSQSSQQQQQQLQQSLPSMHHLIQPTLEATQQTQAAQQQQQQQQPQAALTSPHHQQLQHQSPIHQQQSPHHQQQHTLPSYNQSQQQFDPFANILGDNQPPAAQHVSSPAHVSSPIPAQMQQQQSQQQQQQQQQVPPAQQQQQAQVPQQQQQQPPQPTTPSHHLSSILNETANSNDSSTLAVAANDSNNSSSNSSTNSIVNNQPTSVHDSNSQSSINSSSNNQQQLLMDNTNSHGGNSESAQHVGVDVGLFDNNSMSSNSAAVAAVASNASAAAAALLDSNSQSSNAEFEKNQSESDGLGLGGVVASEPELPQDESSISKTQETSLSTELPAVQEEQLEKPSDDVEQTQISQPLGDMNTSLSEDAKSADEVGEDKSGAVPPMEPPPPQQQQMPPHYPMAPGYDGQNQGHMPPMMPPYGGAPGMYPPYPMLHQQEIAALQQQIQEIYCMPPGHEHQHQEKLMRLQERLNLLQQHEVNDQCAGGGPQCVLFQSMPPMYGSNPLHNQQMVESPQVSSTTGRGRGKGANKPRKPRAKKGEKVAAVGQDLMDISSNVVVGQANATQSIPTTQLPVSEDCVTQGAGDTSVVGMLEYSEGMGDLSQDVHSANELDTSTDGSGKKKKPRKPRIPKDPNKPPRDRTPKSKKPKDPNDPNSTDSPAPTSKKRASTSKKSKKQYGDDGAEQTGEGSEVEDNKPLVPKAESADGEAETTSAVVGVDGESPDYDDIPVSKIPRSANEEEKEPEAGDETVDSVPDSAGDAASTPSRRDRKRSTARSRRNANSEEGGSARRNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPPDSELDSNKRRSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKEKKSSANTANSNAGSDAEKTEPQSGAEGEAGGQEAGEDKSNIAMDESSQLEASSSTSAAAAAAAEKERQSSTDAANAAMSSKPNYVYINTGDEDSMVVQYVLAVRMGKRELIPEKPKEKTPEPKEEKEEEKPEEPEKSDDGEEKPKAEGEDGEAPEGESKPEESKLETESSGMEVDKEETPAENEKSEEDDTSSPKKEEEMEVDEPAEKEAKPEEQAEDDKTEAKSETNEEEKSSDVETAEEAKETESPEEKMEVDETPGSPKPKEESNSEEKSSEETEEEKKDEESAEKEEEKEESKEGDETEKKEEAEKENKPEPVYIDVEEYFVKYRNFSYLHCEWRTEEELLKGDRRVAAKIRRFQQKQSQQLNIFENIEEEPFNPDFTEVDRVLDMSVHTDENSGETTKHYLVKWKSLPYEDCTWELEEDVDNDKIEQYLRFNKIPMRCEWKSKKRPHPEQWKKLEKTPVYKAGNSLRPYQLEGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVHSVYEYGIRGPFLVIAPLSTIPNWQREFEGWTDMNVVVYHGSVTSKQMIQDYEFYYKTETGKVLKEPIKFNVLITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLNFLEPSQFSSQEEFMSEFGSLRTEEEVNKLQALLKPMMLRRLKDDVEKSLAPKEETIIEVELTNIQKKYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKAQHGEDPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNTQGSKDGNNKQLSKKEIEDLLKKGAYGAVMDDDNAGDKFCEEDIDSILKRRTQVITMESEKGSTFSKASFAASGNRSDITIDDPDFWTKWAKKVDIDPDACERDETEDLVLSEPRRRTQIKRYGHEDVMEINSEDSSNENSDEEGGIGLRSRRRKEKRDRNREKKGHDEYIPRERDALAALGLEEIQYGNWAKSECFKVEKGLLSFGWGRWSELLELGQFKRGWRDIDIEDCARIILLYCLQVYKGDEKIKTFIWDLITPTEDGEVQKISRDHSGLHNLVPRGRNGGKSNKDSTGPGTASGSNSGNTTPAHKSSALDGSDKDGGISASAVAAAVSNPTSIHDPNHWSKKEKYDADAYLEGAYKKHLGRHANKVLLRVRMLYYIQHEVIGDLVQQIKDNTPIRNEDDANSKHDDGDEVDDDGTTTTKDSDSTKLTGGDNKDSLLDPERPSSSGLDEEESVAGSYPPTVAAVEDATTMWPSMQDLNTRLRRVITAYQRNYKKEELKQQQKAKLQALVSSTPPLSVPTTPTLQSMQMQLQSGTSGAGSSGSAAGQLDPSGRSLQALMQSQGASTSAAAAAAAAAAAAGGSAGQSQQGVGGAGGSVSVTGSGMPAMPSAADISLMLSILNTTDVNQLAQLDINKLAMYLVSMNNKMERQGKMELAAKERESQRLQLIPKKWNRREEYEFLRVLTGYGVDLHLSTPMGGNNASTLTPDWTKFKQMAHLERKSDETLTDYYKVFVTMCKRQAGLKLAESERGLEGIIEEIEKEHAKLILDRLELLSKLREVARNPQLEDRLKLCTMNADTPDWWEPGRHDKELITAVLKHGLYRSETFIFNDPNFSFGESEKRFIRELEAQIQRTIKLEAFNAEKAEKLAAAEKAAAAEKAAADKAVKNEVIDLDDELMTDESVIKKEGTPVKEEIKAEETADKKEAASPEPNTSEEEEPAKVESETEVKDDAVKAEDSEKETEPEAKAGEKEKSPAEADKDASETEESKASEEKMEVEEASIPAENGQEKAEITAESSPEKTPESEEKKSPEDKDKSVEVEEESAKMEVEEAPKADSEDKSPEKAESDAKESEEKTLPKPEEEKPEESKEESKEKSEDSDKEEKKPSAEAPETPEKASPATETEAAATAAKKPAGDQEILDLVAGPTDPDDDEVMKEKEKAVEEECKKQAAELKARFPDLEVIQPAAVKQQKLEKPKLEMCMIRWFKDFALERRIAHIVACVESGKWPVDSKYSAFASCKGVTDLSIALHESIPHLSSLERRSTTPDVITITTDQGVTKHLQASQMQQVASSAAASSGATGLSQSLSQSKPVSASTLPLLDANNINAAVAAAVAAAAAGGNATSLSSLLPGMSLSAATGASAGGVGGLNVPSAGSGLGKKRKRHIAIDVETERAKLHALLNSSTMAPKDWESEIANMEALTGGSSGRGRGSGSSSALSGMQPPPAHQHASLSRQSSGQFSKPAVPALKTPPPSMGAPMDLSSSLPKMNMTEMLKSASNAVAIDLSEVQDFSMPSKKSSVHAALSSAFPSMGSKSKLDDTLNKLMKKNNCTIEEPVIGKEKKRKKLDEIVLGLSAAKEQKTFPDPSLPSSKKPQIPPSVSVTPANLQSSSSQQQSNQKPFTITVTTVPGKSKGASSSGGSGAGGSSSASGGGAAGGSGLSALQNMAMGGLSSKDSLNALLAQTMATDPQTFLKQQQKMMQFLPPAQRKAYENMLAEMEQAMKLSSKYSANSPHDVKVNKWLSDMTSPLGDQLSIDYVGGGGAGSSSANSRRSNRQQSSSSQQSPSAAQLQKQQQQQQQQQQQQQQQSMAGPQNLTGEEPVPVINKQTGKRLGGNKAPQLKRLMQWLTENPNYEVDPKWLEQMQNPMSAPSPKPSSMDSYGSSAVKSHGGRPSSNSSNASSSSHTQQQQPNPAQSPAGNSGSSKKSSRQQSAAAAALDQAALQFGSLAGLNPNLLANLPGLGAFDPKNPLAAFDPKNPLLSMPFGGMPGMANIPGLGNLNNMNLFASLAGMGGLGNLAGMDTQSLAALMAAAGPSLGGLTGSSGAAGSSKNQGQSGGGSSNSSSSSASKKKQQQQQAQQQAQNEAAQLAAALSASSGGSGGGSSGGAGGKNSAPSASQLAAGFPFLFPNPSLLYPPMGLGGLNPYSLGSSGLGSAYDQLAQQYNLLNGATSSASNTSSTQSKSHQSQSKSSQSRNASAAANSAASLMNAMASMGGASTATTQSSSASGSGRGRQSSGRSQPQVTPTAADMAQLSSLLMPGADPLLLESLSRMSNMDLAQATRLMSSLGMPPLPGTSSSASGGGGGGSTSSSSASKRSSSQSANDQAKEHQKWLESLARGALPTDLAALQAFSQGKMPSTSSSNTATSSSSSSKSAKSSAAAAAAAAAAAQLPQIPGMTSDFSQAFLAEMAAQAMAAAGGSLPLSGPGSLASLAGLTGGSAGGSSGGASGGGSSSGNSSSSKRQREQDAFKQQMDYYTKTLGLGSGISLIPTSAGGSSSSSVAAAYAAALDAEHQQQQQQKSKRSRSEIHPTKEELAAAALAAGLPLNLGASMSSIEKSLRGGSSSSSSSTPAPMSAEQDKVTLTPLNASGSGSGSGSASGSGSSAAAAGLAANLPSQTTITIAPPISSGASTSSERSERSESRISLTITNAADAAKLPPPYEEADELIIQPILKKPAASGNPGSSHGGSVEDLDTAGNTSAANLSGSSSSSAAAAAAAAAAAAAEENRRSSNRLKRPRSGNEQGSVSAEGQPPEKRRELRSTRHTRSSADANSLNLSAGSESGAEERNE
Length5287
PositionKinase
OrganismDrosophila ananassae (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila> Sophophora.
Aromaticity0.04
Grand average of hydropathy-0.839
Instability index64.07
Isoelectric point5.38
Molecular weight568040.30
Publications
PubMed=17994087

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
nucleosome-dependent ATPase activity	GO:0070615	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05441
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            14|     723.19|      47|      50|     557|     603|       1
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  152-  194 (48.82/11.97)	PAYGQQEQQ...................KlapyGAQQ............GMMAGYG.....S.....QQ.....P..PT.....P.QQQQQ........VQAQ...Q...Q
  195-  230 (58.31/15.90)	A.......Q...................Q....VQQQ............QAQQVQQQQQ..S.....QQ.....Q..AR.....L.PQHYPQ.......APGQ...H...P
  237-  276 (41.28/ 8.85)	APAVQAGQ.............................................PPTPQG.YA.....HS.....P..YG.....S.PMQHQP....GRGAPQHvgyG...H
  277-  331 (52.11/13.34)	SGLDPNQAS...................A....YGQHvpgaappghhqqQLGAHQQQQL.QS.....QQ.....Q.........A.QQVQQQ....AQ..QQQ...Q...Q
  332-  402 (42.17/ 9.22)	PHVSLMQQQlpgaglppphmgmppsygsH....HQQQ...........qQQQQAQQQQQ.QAappymSK.....Q..AA.....A.QLNSSP....QYRAPFP...Q....
  536-  589 (73.81/22.31)	.Q....QQQ...................H....HQQWgsqhmaamqqqqQAAAAQQQQQ.QA.....QQ.....Q..AA.....A.QQQQQQ....QQAAPQQ...Q...Q
  590-  625 (51.09/12.91)	AAMLQAQQQ...................H....HQQQ................................msmygQ..AM.....G.QQQQQQ....PQA.P.Q...Q...V
  626-  655 (48.16/11.70)	VPPVAAQQQ...................P....PQQQ................................................qQQQQQQ....QQQQHQQ...Q...Q
  656-  705 (51.37/13.03)	QQSLNDQLQ...................H....SIND............IVGGGNSSGS.TT.....SS.....Q..SS.....Q.QQQQQL....QQSLPSM...HhliQ
  706-  754 (54.73/14.42)	PT.LEATQQ...................T....Q..................AAQQQQQ.QQ.....QP.....Q..AAltsphH.QQLQHQspihQQQSPHH...Q...Q
  755-  805 (41.98/ 9.14)	QHTLPSYNQ........................SQQQ.fdpfanilgdnQPPAAQHVSS.PA.....HV.....S..SP.....I.PAQMQQ....QQS............
  806-  844 (59.01/16.19)	......QQQ...................Q....QQQQ............QVPPAQQQQQaQV.....PQ.....Q...........QQQQPP....QPTTPSH...H...L
 1091- 1136 (46.86/11.16)	PPMMPPY.........................................gGAPGMYPPYP.ML.....HQ.....QeiAA.....L.QQQIQE.iycMPPGHEH...Q...H
 4274- 4311 (53.50/13.91)	QQSSSSQQS...................P....S..................AAQLQKQ.QQ.....QQ.....Q..QQ.....Q.QQQQQQ....SMAGPQ.........
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     399.63|      45|      46|    3518|    3562|       2
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 1659- 1695 (51.44/24.59)	...E.L.I.PEKPKEKT...................P..EPKEE.KEE.........EKPEE...PEKSD.....D........GEEKP..K
 1697- 1730 (41.36/17.91)	E.GE........DGEAP...................E.gESKPEESKL.........ETESS...GMEV......D.........KEET..P
 1787- 1814 (33.83/12.93)	.......................................ETAEEAKET.........ESPEE...KMEVD.....ET..P....GSPKP..K
 3372- 3403 (31.31/11.26)	...E.K.A.A.AAEKAA...................A.....DKAV...................KNEVI.....DL..DDE.LMTDES..V
 3404- 3462 (32.75/12.22)	IkKE.G.T.PVKEEIKA...................E..ETADKK.EAaspepntseEEEPA...KVESEtevkdDA..VKAeDSEKET...
 3463- 3512 (44.20/19.80)	E.PEaK.A.GEKE..KS...................PaeADKDAS.ET.........EESKAseeKMEVE.....EAsiPAE.NGQEKA..E
 3518- 3562 (77.67/41.97)	S.PE.K.T.PESEEKKS...................P..EDKDKSVEV.........EEESA...KMEVE.....EA..PKA.DSEDKS..P
 3572- 3606 (50.39/23.89)	S.EE.K.TlPKPEEEKP...................E..ESKEESKEK.........SEDS......................DKEEKK..P
 3613- 3678 (36.68/14.81)	T.PE.KaS.PATETEAAataakkpagdqeildlvagP..TDPDDD.EV.........MKEKE...KAVEE.....EC..KKQ.AAELKArfP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     694.17|     110|     110|    4928|    5037|       3
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 4374- 4416 (38.36/ 7.14)	.........................................................................................................S........................M..DSYG.SS.AVKS........HGGR..PS.SNSSNASSSSH....TQQ..QQPNPA.QS.......PAG......
 4533- 4592 (53.81/13.07)	....................................................................................................SLGGLT........................GssGAAG.SSkNQGQ........SGGG..SSNSSSSSASKKKQQQQQAQQ.QAQNEAA.QL.......AAALS...A
 4593- 4707 (129.55/42.20)	SSGGSGGGSSGGA.....GGKNS...........APSASQLAAGFPFLFPNPS...........................LLYPPM...........glGGLNPYS........................L..GSSGlGS.AYDQlaqqynllNGAT..SSASNTSSTQSKSHQSQSKSSQS.RNASA.AA.......NSAASLMNA
 4710- 4841 (118.47/37.94)	SMGGASTATTQSSSASG..SG..............RGRQSSGRSQPQVTPTAAdmaqlssllmpgadpllleslsrmsnmDLAQAT.............RLMSSLG........................M..PPLP.GT.SSSA........SGGGggGSTSSSSASKRSSSQSA.NDQAKEHQKWLeSL.......ARGA..LPT
 4868- 4989 (160.57/54.13)	SSSKSAKSSAAAAAAAAAAAQLP...........QIPGMTSDFSQAFLAEMAA...........................Q.AMAAaggslplsgpgslASLAGLT........................G..GSAG.GS.SGGA........SGGG..SSSGNSSSSKRQREQDAFKQQMDYYTKTL.GL.......GSGISLIPT
 4990- 5094 (128.89/41.95)	SAGGSSSSSVAAAYAAALDAEHQ...........QQQQQKSKRSRSEIHPTKE...........................ELAAAA...........laAGLPLNL........................G..ASMS.SI.EKSL........RGGS..SSSSSSTPAPMSAEQDKVT.............ltplnasGSGSG..SG
 5095- 5202 (64.52/17.20)	SASGSGSSAAAAGLAANLPSQTTitiappissgaSTSSERSERSESRISLT............................................itnaADAAKLPppyeeadeliiqpilkkpaasgnpG..SSHG.GS...................................V..EDLD....TA.GN.......TSAANL...
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     181.61|      42|      48|    3006|    3052|       4
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 2794- 2831 (55.45/22.62)	ASG........SN...SGNTTPAHKSSALDGSDKDGGISASAVAAAVSN
 3006- 3049 (50.38/30.95)	.....LQALvsSTpplSVPTTPTLQSMQMQLQSGTSGAGSSGSAAGQLD
 3050- 3081 (39.66/13.60)	PSGrsLQAL.................MQSQGASTSAAAAAAAAAAAAGG
 3082- 3104 (36.11/11.57)	SAG..........................QSQQGVGGAGGSVSVTGSGM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     308.12|      44|      59|    3947|    3990|       5
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 3787- 3823 (32.06/ 9.10)	QQvAS....SAA...................ASSGatGLSQ.S.....LSQ.SK...........PVS.AST..............LPLL....DAN
 3853- 3882 (32.40/ 9.29)	....S....LS....................AATG..A.SAGG.....VGG.LNVP....SAG.......SG..............LGK.....KRK
 3883- 3918 (33.85/10.12)	RH.IA....IDV...................ET......ERAK.....LHA.LLN....SSTM.APKDWESE..............IANM....E..
 3920- 3943 (27.29/ 6.39)	.........LTG...................GSSG..R........................G.RGSGSSSA..............LSGM....QPP
 3947- 3990 (78.80/35.69)	QH.AS....LSR...................QSSG..QFSKPA.....VPA.LKTP..PPSMG.APMDLSSS..............LPKM....NMT
 3994- 4050 (38.29/12.65)	KS.ASnavaIDL...................SEVQ..DFSMPSkkssvHAA.LSSA..FPSMG.SKSKLDDT..............LNKLmkknNCT
 4052- 4111 (28.95/ 7.33)	EE.PV....IGKekkrkkldeivlglsaakeQKT....FPDPS.....LPS.SKKPqiPPSVSvTPANLQSS......................SSQ
 4112- 4166 (36.49/11.62)	QQ........SN...................QKPF..TITVTT.....VPGkSKGA..SSSGG.SGAGGSSSasgggaaggsglsaLQNM....AM.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.30|      32|      59|    4442|    4473|       6
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 4442- 4466 (40.53/19.99)	...............FGSLAGLNPNLLANLPGLGAFDPKN
 4467- 4501 (46.38/24.14)	PLAAFDPknpllsmpFGGMPG.....MANIPGLGNLNNMN
 4505- 4526 (29.40/12.09)	SLAGMGG........LGNLAGMDTQSLAAL..........
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.21|      23|      24|    1298|    1321|       7
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 1298- 1320 (43.56/17.57)	KKPRKPRIPKDPNKPPRDRTPKS
 1551- 1573 (26.65/ 9.62)	KKSSANTANSNAGSDAEKTEPQS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      98.08|      23|      24|     853|     875|       8
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  845-  868 (23.12/ 8.55)	..SSilnETA.NS..NDSSTLAVAANDSN
  869-  891 (22.84/ 8.31)	NSSS...NSStNSivNNQPT...SVHDSN
  892-  914 (29.71/14.05)	SQSS...INS.SS..NNQQQLLMDNTNSH
 1020- 1038 (22.42/ 7.96)	KPSD...DVE.QT..QISQPL....GDMN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     286.43|      46|      48|     435|     480|       9
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   45-   91 (71.85/33.29)	PPRHRAPHPLQQQPQYPSyQPTAENLY......GLGAADHQAAMGLGVGVGVG
  103-  128 (44.53/16.89)	SGWGAAPTGV...PGQAA.....................AYP...GAGLGAYG
  129-  151 (27.33/ 6.57)	HPQAAPPAQ..QQRQSNA.SAYRQHM...........................
  435-  480 (88.03/43.00)	PQQAQAQQQVVQQPQQPS.QHSIQGMV......GLPSPRPQPPSSGAVGGAVG
  486-  525 (54.69/22.99)	PPPVAAPVNTLQALEQ.........MVmptqahGLP.PMDYP...SAYRSAVG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     305.71|      49|      49|    1326|    1374|      10
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 1328- 1376 (76.47/36.80)	D.....PNST..............................D....SPAPTSK....KRASTSKKSKKQYGDD............................................GAE............QTGEGSE.VEDNKPLVPK
 1377- 1423 (51.58/21.81)	......AESA..............................D....GEAETTS....AVVGVDGES.PDYDDI............................................PVS............KIPRSAN.EEEKEPEAGD
 1424- 1479 (40.09/14.89)	EtvdsvPDSA..............................GdaasTPSRRDR....KR.STARSRRNANSEE............................................GGS...........aRRNRGSL...SAKALKKR
 1497- 1593 (44.38/17.48)	D.....RTPP..............................P....SPPPDSEldsnKRRSSRNTQRKKYIDDvmlrfsddensllvaspvkkekkssantansnagsdaektepqsGAE............GEAGGQE.AGEDKSNIAM
 1594- 1646 (29.26/ 8.37)	D.....ESSQ.............................lE....ASSSTSA....AAAAAAEK.ERQSSTD............................................AANaamsskpnyvyiNTG.......DEDSMV..
 1742- 1775 (31.41/ 9.66)	...........................................................SSPKKEEEMEVDE............................................PAE............KEAKPEEqAEDDKTEAKS
 1776- 1850 (32.52/10.33)	EtneeeKSSDvetaeeaketespeekmevdetpgspkpkeE....SNSE..E....K..SSEETEEEKKDEE............................................SAE............K.....E.EEKEESKEGD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.71|      11|      15|    1061|    1071|      11
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 1061- 1071 (24.50/11.66)	PMEPPPPQQQQ
 1077- 1087 (23.21/10.48)	PMAPGYDGQNQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.45|      27|      29|    5226|    5254|      12
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 5226- 5254 (43.29/28.53)	RRSSNRlkRPRSGNEQGS..VSAEGQPP.EKR
 5256- 5285 (35.16/16.60)	ELRSTR..HTRSSADANSlnLSAGSESGaEER
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      52.03|      10|      29|     930|     939|      13
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  930-  939 (19.22/11.48)	LFDNNSMSSN
  957-  966 (17.19/ 9.08)	LLDSNSQSSN
  969-  978 (15.62/ 7.23)	FEKNQSESDG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.49|      26|      28|    1945|    1970|      14
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 1861- 1889 (34.77/18.98)	.EN.KPEPvyidVEEYFVKYRNFSYLHCEWR
 1945- 1970 (49.09/30.24)	DEN.SGET....TKHYLVKWKSLPYEDCTWE
 1972- 1996 (36.63/20.45)	EEDvDNDK....IEQYL.RFNKIPMR.CEWK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     131.60|      28|      30|    2501|    2528|      15
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 2501- 2524 (31.28/17.53)	...........DGN.NKQLSKKEI..........EDL..........LKKGAYGAV
 2525- 2551 (20.27/ 7.93)	MDDDnagdkfcE.........EDI..........DSI..........LKRRTQVIT
 2552- 2574 (30.95/17.24)	MESE.......KGS.T..FSKASF..........A.............ASGNRSDI
 2576- 2623 (30.51/16.85)	IDDP.......DFW.TKWAKKVDIdpdacerdetEDLvlseprrrtqIKRYGHEDV
 2624- 2643 (18.60/ 6.48)	ME............iNSEDSSNEN..........SD............EEGGIG..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.67|      21|      24|    2887|    2910|      16
---------------------------------------------------------------------------
 2887- 2910 (28.77/30.96)	VQQikDNTPIRNEDDAnSKHDDGD
 2912- 2932 (35.91/24.14)	VDD..DGTTTTKDSDS.TKLTGGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.24|      25|      58|    2218|    2242|      17
---------------------------------------------------------------------------
 2218- 2242 (39.53/21.54)	EFGSLRTEEE......VNKLQALLKPMM.LRR
 2249- 2277 (27.96/13.01)	K..SLAPKEEtiieveLTNIQKKYYRGI.LEQ
 2278- 2303 (35.75/18.76)	NFSFLKKGTT......SANIPNLMNTMMeLRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.26|      15|      15|    2683|    2697|      18
---------------------------------------------------------------------------
 2683- 2697 (27.81/18.43)	YGNWAK.SECFKVEKG
 2703- 2718 (22.35/13.07)	WGRWSElLELGQFKRG
 2734- 2741 (16.09/ 6.93)	Y........CLQVYKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     112.85|      29|      48|    2389|    2417|      23
---------------------------------------------------------------------------
 2389- 2413 (38.29/20.09)	......DGRIR.GNLRQEAIDR...YS.KPGSDRFV
 2414- 2439 (20.82/ 7.33)	FLLCtkAGGLG.INL..TAADTviiY....DSD...
 2443- 2461 (23.62/ 9.38)	..........Q.NDLQAQA..R...CH.RIGQRKMV
 2465- 2490 (30.12/14.12)	RLLC.......rNTYEREMFDK...ASmKLGLDKAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.64|      11|     106|    4149|    4160|      24
---------------------------------------------------------------------------
 4149- 4160 (16.02/10.73)	GGGAAGGSgLSA
 4167- 4177 (18.63/ 7.35)	GGLSSKDS.LNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.51|      10|      29|    2103|    2112|      26
---------------------------------------------------------------------------
 2103- 2112 (18.82/12.12)	VTSKQMI.QDY
 2134- 2144 (14.69/ 7.60)	ITTFEMIvTDY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.75|      19|      62|    2013|    2031|      27
---------------------------------------------------------------------------
 2013- 2031 (36.64/22.17)	PVYKAGNSLR.PY....QLEGL.NW
 2035- 2052 (31.19/17.55)	SWYNTHNCIL.AD....EM.GL.GK
 2062- 2084 (18.93/ 7.17)	SVYEYG..IRgPFlviaPLSTIpNW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.67|      20|     116|    4218|    4247|      28
---------------------------------------------------------------------------
 4218- 4239 (27.49/13.06)	QAmKLSSKYSANSPHDVKvNKW
 4338- 4357 (34.17/23.26)	LK.RLMQWLTENPNYEVD.PKW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     138.53|      29|      29|    1235|    1263|      36
---------------------------------------------------------------------------
 1163- 1200 (34.24/15.49)	GpQ.CVLFQSMPPmygsnplhN.QQMVESPQVSSTTGRGR
 1201- 1229 (32.86/14.49)	G.KgANKPRK.PR........A.KKGEKVAAVGQDLMDIS
 1235- 1263 (49.13/26.29)	G.Q.ANATQSIPT........T.QLPVSEDCVTQGAGDTS
 1273- 1295 (22.29/ 6.83)	G.M.GDLSQDVHS........AnEL....DTSTDGSG...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.74|      15|     104|    2657|    2671|      37
---------------------------------------------------------------------------
 2657- 2671 (27.08/14.72)	REKKGHDEYIPRERD
 2766- 2780 (26.66/14.36)	RDHSGLHNLVPRGRN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.59|      25|      29|    2147|    2174|      41
---------------------------------------------------------------------------
 2147- 2174 (39.18/33.31)	LkafNWRLCVIDEAHRLKNRNCKLLEGL
 2177- 2201 (40.41/25.49)	L...NLEHRVLLSGTPLQNNISELFSLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.05|      17|      24|    3192|    3214|      42
---------------------------------------------------------------------------
 3192- 3212 (25.95/30.74)	HLSTpmggNNASTLTPDWTKF
 3217- 3233 (30.10/13.41)	HLER....KSDETLTDYYKVF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05441 with Med12 domain of Kingdom Metazoa
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