<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05419
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLILDNAMPVGLNDVDDLFGDGVGLSLPAGRTQSKQLHQRMDELRSRGCCQAVAWSRTGTIASITPDGLSVELRCLRRNPENGSWDLSDPTKCHLVSGSATIPIVHLAWAGTSTPDLAVIDSIGRVTIVSFSIALNHPYLQRKWDTDSIDDMHGVMGAYWLGIAPASQQSYNVMYGPANKHGNGYTYESSFVHASGPTHPTPAKSALFTVSSNGTLRMLWSQSNNRIEETTMELESVNSSDDQVTHATFGSEKKSLILALATTSKQLSLVKIEIQWGAAAQSDKSSAQQAKVLSPSLVEKHLATTNWLQGGTSDISHNEYMAELSHLEVLPSLIDNTGKNIAPPMIVAIRSRAPSEGSYQMAQSILDRWEAVEQRQNLHPAFEQLGRRNSVSSEVPNGTQLRKIDPIVINKVVIGFHAINFGKVLVLAFADGSVEYRDRFTFEELYTTEDTTKVMSLRQVGWTFADEGPCQQVAFSPTYCSMIQMGDDGKVRWNRLHRPLDDIGESMQDAPYSASVAGLTVSAAPSIFYSNNYDDILAIARPFTTKKRFIQDWVTELIRMLKIQVDYSEDTHHDSLVRNGSLQSCLSIMNALGFRGEFNPRSFQGKLSMLSLNVRNVVVLITIASNTPLTAREKLSPLDEPEVVETLAGCAKWSLDLLAWLIDCLFELMNDDKFMALMTPQRFNEIAPYLSNTNNVALHFLLSSSSRGFLSAVCRRLGHLEALSARAIDFYRRQSAAPDQSSSGKAAPQLQQAYQRMQHATSSGLVKVGEFEKLLTVLGNDIRQAYQNILPALVKAQANAPQGKQIDMAVKTTRVQFELALLLSASPPPAFLQIMIKIFNKDLRAFRNLTDPSRLFFANYDLLEAQDDKRSLAAKKAAGMMYVDVFKRLEIKPGSKQWRRCTRCSGVMVDVFGSRPGFTFVLGQQRRCSCGGHWTLLQKGKLS |
Length | 944 |
Position | Tail |
Organism | Neonectria ditissima |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Hypocreales> Nectriaceae> Neonectria.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.203 |
Instability index | 47.35 |
Isoelectric point | 7.87 |
Molecular weight | 104445.89 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP05419
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 82.70| 23| 24| 884| 907| 1
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884- 907 (41.33/32.97) VDVF.KRLEIKPGSKQWRRCTrCSG
910- 933 (41.37/27.88) VDVFgSRPGFTFVLGQQRRCS.CGG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 134.05| 37| 327| 29| 75| 5
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33- 69 (68.03/60.50) TQSKQLHQRMDELRSRGCCQAVAWSRT.GTIASITPDG
453- 490 (66.02/35.06) TKVMSLRQVGWTFADEGPCQQVAFSPTyCSMIQMGDDG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 44.35| 12| 29| 750| 761| 8
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750- 761 (22.66/16.27) QLQQAYQRMQHA
782- 793 (21.69/15.25) DIRQAYQNILPA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 96.30| 29| 684| 108| 136| 10
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108- 136 (48.38/29.82) LAWAGTSTPDLAVIDSIGRVTIVSFSIAL
794- 822 (47.93/29.48) LVKAQANAPQGKQIDMAVKTTRVQFELAL
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