<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05414

Description F-box/WD repeat-containing TBL1XR1-like protein
SequenceMSVTGNRSLFECSVCYSFYNNDYRKPKYLVCHCTICLDCICKSMESSPSGVRCPLCRVWTEIGSMEVNKALRTNQDILDFMEIWLFKLTNNVESPSLGRDRDTDYNPAITSTKLQWCCACQQLALNTCRDNSHSLLTVSPTVLKLAQEAVTQGRQSQANWENAITKRGDLKTIVTSIQSSVNRLKDRVDALVEENERALVALRDCFEDVTQSINALDPLASNVDLKGFVIQSEHDLTIATDNLEKWSSFDGTHVSVSLESPHQRLMNACSVLDGVISWVDNPSNVVKEEDGKMPESEIDINAFLLDARRFVGFLLASVPNSPVPNVRRNKETRKPKRFSNPLPSVRPISLSLSSPIPHRFNIPPLKNESLKVSDPPSNGHLTEYTSTCAWNPTESVLASTRKNECVSLNFGPNFNNLTPLSFEGTLHIGSNQPSPKSGDISRLAWNPKGTQLVTGSKDGWISFWTLSGTSLYQQKQHSEEIMAMNWNPEGKLLATAGRDTLIKIWNAAGQNAVQSFSYHTNAVWDIQWQSENTFASCDISGKMFFGDIRLVNKPQFTYTGHKDWVKCLHWDPEHFLLASCSVDTTVKIWTPLVPPFLQEYTAHTKSVNAVQWSPTGPGSLYPNANRYLASCSDDQTAQILDVSKQAVVHKLETKTKSSKMSCLSFSCDGKLLATGNENGVVEIWNVHNGRVVHTFADFGSSINEIAWHKDGTKLAIARQDKPCGIVDIKNNKQNK
Length735
PositionTail
OrganismDaphnia magna
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Crustacea> Branchiopoda> Diplostraca> Cladocera> Anomopoda> Daphniidae> Daphnia.
Aromaticity0.08
Grand average of hydropathy-0.377
Instability index44.38
Isoelectric point6.80
Molecular weight81963.74
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
metal ion binding	GO:0046872	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05414
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     183.36|      23|      54|     386|     408|       1
---------------------------------------------------------------------------
  351-  372 (26.09/10.62)	SLSSPIPHRFNIPPL.KNESLKV
  386-  408 (37.42/18.10)	STCAWNPTESVLASTRKNECVSL
  441-  463 (38.90/19.08)	SRLAWNPKGTQLVTGSKDGWISF
  482-  499 (23.34/ 8.80)	MAMNWNPEGKLLATAGRD.....
  570-  588 (24.63/ 9.65)	....WDPEHFLLASCSVDTTVKI
  661-  683 (32.97/15.16)	SCLSFSCDGKLLATGNENGVVEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.02|      31|      38|     265|     295|       3
---------------------------------------------------------------------------
  216-  240 (24.83/10.97)	.......LDPLASNVDL.K.GFVIQsEHDLTIAT
  265-  295 (53.95/31.83)	LMNACSVLDGVISWVDN.P.SNVVK.EEDGKMPE
  304-  336 (40.24/22.01)	LLDARRFVGFLLASVPNsPvPNVRR.NKETRKPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.37|      29|     172|     505|     533|       5
---------------------------------------------------------------------------
  505-  533 (54.38/42.31)	WNAAGQNAVQSFSYHTNAVWDIQWQSENT
  684-  712 (53.99/41.94)	WNVHNGRVVHTFADFGSSINEIAWHKDGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.99|      21|     172|     241|     262|       6
---------------------------------------------------------------------------
  241-  262 (35.49/32.72)	DNLEKWsSFDGT.HVSVSLESPH
  415-  436 (35.50/26.67)	NNLTPL.SFEGTlHIGSNQPSPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.45|      48|      54|      86|     135|       7
---------------------------------------------------------------------------
   74-  130 (75.95/49.47)	NQDILdfmeiwlFKLTNnvESPSLGRDRDTDYNPAITS.TKLQWCCACQQLALNTCRD
  131-  186 (66.50/37.67)	NSHSLltvsptvLKLAQ..EAVTQGRQSQANWENAITKrGDLKTIVTSIQSSVNRLKD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05414 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA