<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05414

Description F-box/WD repeat-containing TBL1XR1-like protein
SequenceMSVTGNRSLFECSVCYSFYNNDYRKPKYLVCHCTICLDCICKSMESSPSGVRCPLCRVWTEIGSMEVNKALRTNQDILDFMEIWLFKLTNNVESPSLGRDRDTDYNPAITSTKLQWCCACQQLALNTCRDNSHSLLTVSPTVLKLAQEAVTQGRQSQANWENAITKRGDLKTIVTSIQSSVNRLKDRVDALVEENERALVALRDCFEDVTQSINALDPLASNVDLKGFVIQSEHDLTIATDNLEKWSSFDGTHVSVSLESPHQRLMNACSVLDGVISWVDNPSNVVKEEDGKMPESEIDINAFLLDARRFVGFLLASVPNSPVPNVRRNKETRKPKRFSNPLPSVRPISLSLSSPIPHRFNIPPLKNESLKVSDPPSNGHLTEYTSTCAWNPTESVLASTRKNECVSLNFGPNFNNLTPLSFEGTLHIGSNQPSPKSGDISRLAWNPKGTQLVTGSKDGWISFWTLSGTSLYQQKQHSEEIMAMNWNPEGKLLATAGRDTLIKIWNAAGQNAVQSFSYHTNAVWDIQWQSENTFASCDISGKMFFGDIRLVNKPQFTYTGHKDWVKCLHWDPEHFLLASCSVDTTVKIWTPLVPPFLQEYTAHTKSVNAVQWSPTGPGSLYPNANRYLASCSDDQTAQILDVSKQAVVHKLETKTKSSKMSCLSFSCDGKLLATGNENGVVEIWNVHNGRVVHTFADFGSSINEIAWHKDGTKLAIARQDKPCGIVDIKNNKQNK
Length735
PositionTail
OrganismDaphnia magna
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Crustacea> Branchiopoda> Diplostraca> Cladocera> Anomopoda> Daphniidae> Daphnia.
Aromaticity0.08
Grand average of hydropathy-0.377
Instability index44.38
Isoelectric point6.80
Molecular weight81963.74
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
metal ion binding	GO:0046872	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05414
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     183.36|      23|      54|     386|     408|       1
---------------------------------------------------------------------------
  351-  372 (26.09/10.62)	SLSSPIPHRFNIPPL.KNESLKV
  386-  408 (37.42/18.10)	STCAWNPTESVLASTRKNECVSL
  441-  463 (38.90/19.08)	SRLAWNPKGTQLVTGSKDGWISF
  482-  499 (23.34/ 8.80)	MAMNWNPEGKLLATAGRD.....
  570-  588 (24.63/ 9.65)	....WDPEHFLLASCSVDTTVKI
  661-  683 (32.97/15.16)	SCLSFSCDGKLLATGNENGVVEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.02|      31|      38|     265|     295|       3
---------------------------------------------------------------------------
  216-  240 (24.83/10.97)	.......LDPLASNVDL.K.GFVIQsEHDLTIAT
  265-  295 (53.95/31.83)	LMNACSVLDGVISWVDN.P.SNVVK.EEDGKMPE
  304-  336 (40.24/22.01)	LLDARRFVGFLLASVPNsPvPNVRR.NKETRKPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.37|      29|     172|     505|     533|       5
---------------------------------------------------------------------------
  505-  533 (54.38/42.31)	WNAAGQNAVQSFSYHTNAVWDIQWQSENT
  684-  712 (53.99/41.94)	WNVHNGRVVHTFADFGSSINEIAWHKDGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.99|      21|     172|     241|     262|       6
---------------------------------------------------------------------------
  241-  262 (35.49/32.72)	DNLEKWsSFDGT.HVSVSLESPH
  415-  436 (35.50/26.67)	NNLTPL.SFEGTlHIGSNQPSPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.45|      48|      54|      86|     135|       7
---------------------------------------------------------------------------
   74-  130 (75.95/49.47)	NQDILdfmeiwlFKLTNnvESPSLGRDRDTDYNPAITS.TKLQWCCACQQLALNTCRD
  131-  186 (66.50/37.67)	NSHSLltvsptvLKLAQ..EAVTQGRQSQANWENAITKrGDLKTIVTSIQSSVNRLKD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05414 with Med16 domain of Kingdom Metazoa
Unable to open file!