<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05410

Description F-box/WD repeat-containing protein TBL1XR1
SequenceMSFSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNINGALVPPAALLSIIQKGLQYTEAEISVGDDGSERPMESLSLIDAVMPDVVASRQQQLQNNQKPQVVKTEPPNSNGDEPMHSYPNPNEGREEETGVEIPASKSTVLRGHESEVFICAWNPTTDLLASGSGDSTARIWNMNDNSSSPTQLVLRHCIQKGGTEVPSNKDVTSLDWNCDGTLLATGSYDGYARIWTTDGRLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVDWQSNVSFASCSTDQCIHVCKLGSDKPTKSFQGHTNEVNAIKWDPQGNLLASCSDDMTLKIWSMKQDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNMNLILASASFDSTVRLWDVERGLCIHTLTKHTEPVYSVAFSPDGKYLASGSFDKCVHIWSTQSGQLLHSYKGTGGIFEVCWNSRGDKVGASASDGSVFVLDLRK
Length492
PositionTail
OrganismDaphnia magna
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Crustacea> Branchiopoda> Diplostraca> Cladocera> Anomopoda> Daphniidae> Daphnia.
Aromaticity0.08
Grand average of hydropathy-0.412
Instability index41.02
Isoelectric point5.36
Molecular weight53828.33
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05410
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     344.58|      40|      40|     300|     339|       1
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  133-  177 (50.83/26.79)	GVEIPaSKStvLRG.HE...........SEVFICAWNPTT.........dlL.A.SG...........SGDS...........TARIWNM
  180-  230 (41.42/20.59)	NSSSP.TQL..VLR.HCiqkggtevpsnKDVTSLDWNCDG.........tlL.A.TG...........SYDG...........YARI.W.
  231-  278 (23.61/ 8.85)	TTDGR.LAS..TLGqHK...........GPIFALKWNKKG..........nY.IlSAgvdkttiiwdaSTGQ...........C......
  279-  314 (40.52/20.00)	......TQQ..FAF.HS...........APALDVDW..QS........nvsF.A.SC...........STDQ...........CIHVCKL
  315-  356 (65.56/36.50)	GSDKP.TKS..FQG.HT...........NEVNAIKWDPQG.........nlL.A.SC...........SDDM...........TLKIWSM
  357-  414 (37.02/17.69)	KQDTC.VHD..LQA.HN...........KEIYTIKWSPTGpgtnnpnmnliL.A.SA...........SFDStvrlwdverglCIH....
  415-  449 (40.83/20.20)	........T..LTK.HT...........EPVYSVAFSPDG..........kYlA.SG...........SFDK...........CVHIWST
  450-  490 (44.80/22.82)	QSGQL.LHS..YKG..T...........GGIFEVCWNSRG.........dkV.G.AS...........ASDG...........SVFVLDL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05410 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VASRQQQLQNNQKPQVVKTEPPNSNGDEPMHSYPNPNEGREEETGVEIPASKS
89
141










Molecular Recognition Features






MoRF SequenceStartStop




NANANA