<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05396

Description Uncharacterized protein
SequenceMADKEAPSGFIPGRAEATAEKPSPPSVAGSSEQTLRSGDPASPRRSHERTRIRRAEKDGLMMAEERREDERRKANNKRKEGAISRLMDSDRALADLLMQTAGSLSALVTITSDGEKALAAGSDNAEHQAQAARDSLPSTASSADRVKVFEGRASQWFATLNDIQTSLRTATATLRADGRPAISDGVNLFGPGSSYAARTEAGSAGRGHTLPLQGAMSGHRPRKEDRDASLSLGALRLQQQSWRQLNDALEEIATGSAHLEPDQHRIARNRPSTSEERVGDVTSIVREHQLTADARLIGELLGSTSTLFPDQSPSEQHNTASGSGSAALA
Length329
PositionHead
OrganismCeraceosorus bombacis
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Exobasidiomycetes> Ceraceosorales> Ceraceosoraceae> Ceraceosorus.
Aromaticity0.02
Grand average of hydropathy-0.723
Instability index52.15
Isoelectric point6.48
Molecular weight35091.19
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05396
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.72|      12|      14|       4|      16|       1
---------------------------------------------------------------------------
    4-   16 (17.08/14.53)	KEAPSGfIPGRAE
   21-   32 (21.64/12.56)	KPSPPS.VAGSSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.17|      19|      21|      41|      59|       2
---------------------------------------------------------------------------
   41-   59 (33.17/22.39)	ASPRRSHERTRIRRAEKDG
   63-   81 (32.00/21.33)	AEERREDERRKANNKRKEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.92|      18|      21|     223|     243|       3
---------------------------------------------------------------------------
  226-  243 (30.45/19.52)	RDA..SLSLGALRLQQQSWR
  246-  265 (26.46/ 9.13)	NDAleEIATGSAHLEPDQHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.83|      32|     116|     152|     207|       5
---------------------------------------------------------------------------
  174-  207 (47.38/50.54)	LRADGR...PAISDGVNLFgPGSSYAARTEAGSaGRG
  290-  324 (49.45/14.56)	LTADARligELLGSTSTLF.PDQSPSEQHNTAS.GSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05396 with Med11 domain of Kingdom Fungi
Unable to open file!