<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05394

Description Uncharacterized protein
SequenceMEGQWRSEIPEDVRKKMITEMYHELARISGEVDKQKVWGSAAKFELMLWSSSPDRNSYLMKMQRKIMSLKKKPGPNDMQQQANMMTNANNVVTSNAINNAASGLNNTLNMNMNSVNVNATMNAQQYQQNHVAQQNSAMAAATNGLSSVSPALNPAATASGNASSATPMTSGTATTTSLSNPPQQQAQQWLQRIQVQFQAQQRQLLHTQNQETQQLRQQHMNQQQQLSQQHQQQGVAPDMRRQQLQTLQQQHQLARTRLQHLHKSKQQQLQRKQQQYLMQKQHQLQQQQQQGALATATTNSALSTAMMATSQAGVATTPILISNATTVQNTVPPVSNTQGAAAIAAAQRGVKPDQIAAAHTQQAAMREMQRAQNTSQLLSDSTLKHQPSNGPATNATTPATTVSTANVTTTSTTSGNDTQTYVERLKEMKQKYWDDLVIVYREFERMVKQKPANQQQERINTFLVNLKRIIALLQQDPSKVTSSNKNDLDRVEAHIHKQVLPILDRLKNKTRAATGNAPISAVTQQEQLKKAQEAQRLAHLQEQQKKMQEQQKAEVQRKLFEEQKKKMQLEAAAAAVKKQEIFEQQRKQKEKQLQAQQVLLQQQQRQQLLAQQQAQLKQNQMSVTAQQQSATSLGVTEATTAASMLATDNSLPSASVVGSSGSPTSLGSTSESPIDMSTLSPVEATSVASLTPAQYQTFKLPEARKQQLTAQHAKLREQQQELIMQQSRVKTPSHQAKLAQQAQRVAQMINKISQQLVQCKLAEEYEQSKNMGMTPIMQSTPGVTATASVKPECDTVTSGVTGTSADLASVSATSSPGLAVPDAGSVVDATAAGLNSDAAASGKMDDGFKSVLPDMTGLGASEKLLTAVAAYEKHKPEVLKRGSARFSRIAIAIGAKLNTSYVVS
Length904
PositionTail
OrganismPlasmopara halstedii
KingdomOomycetes
LineageEukaryota> Sar> Stramenopiles> Oomycota> Peronosporales> Peronosporaceae> Plasmopara.
Aromaticity0.03
Grand average of hydropathy-0.678
Instability index46.64
Isoelectric point9.81
Molecular weight99077.59
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05394
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.63|      20|      21|     545|     565|       1
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  216-  242 (22.04/ 6.12)	RQQhMNQQQQLSQQHQQQgvapdmRRQ
  590-  609 (30.59/ 7.41)	EKQ.LQAQQVLLQQQQRQ......QLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     469.65|      70|      78|     270|     339|       2
---------------------------------------------------------------------------
   55-  109 (53.87/17.33)	.........RN.SYL............MKMQR.KIMSlK...KK..............PGP..........N.DMQQQAN.M....MT..NA..........NNV...............V..T.......................SN.A..INN.AASGLNNTLN
  120-  182 (52.32/16.60)	T....M..NAQ.QY.....................QQ.NhvaQQ..............NSAM....AAATNGlSSVSPALnP....AA..TA..........SGN..............ASsaT.................PMT..SGT.ATTTSL.SNPP......
  270-  339 (121.83/49.44)	Q....R..KQQ.QYL............MQKQH.QLQQ.Q...QQ..............QGAL....ATATTN.SALSTAM.M....AT..SQ..........AGV..............AT..T.................PIL..ISN.ATTVQN.TVPPVSNTQG
  347-  415 (54.68/17.71)	Q....RgvKPD.Q..............IAAAH.T.........Q..............QAAMremqRAQNTS.QLLSDST.LkhqpSN..GP..........ATN..............AT..T.................P........ATTVSTaNVTTTSTTSG
  426-  524 (52.97/16.90)	K....E..MKQ.KYWddlvivyreferMVKQK.PANQ.Q...QE..............R..I....NTFLVN.LKRIIAL.L....QQ..DP..........SKV..............TS..SnkndldrveahihkqvlPILdrLKN.KTRAAT.GNAPISAVTQ
  529-  586 (39.13/10.37)	K....K..AQEaQRL..........ahLQEQQ.KKMQ.E...QQ..............KAEV....QRKLFE.EQKKKMQ.L....EA..AA..........AAV..............KK..Q.................EIF.........EQQ.R.........
  611-  687 (55.44/18.07)	........QQQ.AQL............KQNQM.SV.T.A...QQ..............QSAT....SLGVTE.ATTAASM.L....AT..DNslpsasvvgsSGS..............PT..S..........lgstsesPID..MS.........TLSPVEATSV
  699-  795 (39.41/10.50)	KlpeaR..KQQ................LTAQHaKLRE.Q...QQelimqqsrvktpshQAKL....A....Q.QAQRVAQ.M....INkiSQ..........QLVqcklaeeyeqsknmGM..T.................PIM..QSTpGVTATA.SVKPECDT..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.21|      13|      15|     806|     818|       5
---------------------------------------------------------------------------
  813-  828 (15.08/ 8.50)	TSSPGL..avpDAGSVVD
  843-  860 (14.12/ 7.42)	KMDDGFksvlpDMTGLGA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05394 with Med15 domain of Kingdom Oomycetes
Unable to open file!