<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05390

Description ATP-dependent DNA helicase (Fragment)
SequenceMYEEDNIQGELLLVQAELDDIQGQISALIDRQEELYERESQLKAMLEVSKASNNTINNTPSVGPKDWSGSFLWDSRADDVRFNVFGISSYRQNQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQDQVMGLAALGIQAYMLASTTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATNKVQIDLIEMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVIDEIANFISESYPNNESGIVYCFSRKECEQVAKELSERGILADYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILYYRPGDVPRQSSMVFYENCGLQNLYDIVRYCQSKRSCRRGAFFRHFGEAAQDCNGMCDNCTSSLELKEIDATRMMILHQLGNFTVALNYILDTCMFFSLYFYKMVFLG
Length523
PositionUnknown
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.10
Grand average of hydropathy-0.150
Instability index41.43
Isoelectric point6.34
Molecular weight59248.57
Publications
PubMed=16100779
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
DNA helicase activity	GO:0003678	IEA:UniProtKB-EC
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05390
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.14|      57|     227|     139|     205|       1
---------------------------------------------------------------------------
  147-  205 (84.50/74.08)	MGLAALGIQaYMLASTTNKEVEKFVYKALDKGEGELK...ILYVTPEKISKSKRfMSKLEKC
  375-  434 (97.64/59.29)	MGINKPDVR.FVIHHSLSKSMETYYQESGRAGRDGLPsecILYYRPGDVPRQSS.MVFYENC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.42|      12|     125|     319|     330|       2
---------------------------------------------------------------------------
  319-  330 (24.03/14.56)	YCFSRKECEQVA
  445-  456 (24.39/14.88)	YCQSKRSCRRGA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05390 with Med34 domain of Kingdom Viridiplantae
Unable to open file!