<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05389

Description Os10g0548400 protein (Fragment)
SequenceSGPRICGPRGIFFFLTLLVWEFDTVTSRGQVGGESRRRRRWSVSGRSRRRRGEMEATVDELSEAYQEFVAAAAAVVEARGQSGGEKNAATDAALEAFKQRWELFRVACDHAEELVESIRQRIGSECLVDEATGASSSSSAALAAPGIKPISAVRLEQMSKAVRWLVIELQHGAGGASAAGPGGGGGAAAAASGVAGQHGHGGVDTRFPEDGAQ
Length213
PositionTail
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.06
Grand average of hydropathy-0.262
Instability index63.03
Isoelectric point6.44
Molecular weight22294.54
Publications
PubMed=16100779
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
cold acclimation	GO:0009631	IEA:InterPro
leaf senescence	GO:0010150	IEA:InterPro
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
root development	GO:0048364	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05389
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.77|      24|     114|      70|      93|       1
---------------------------------------------------------------------------
   25-   42 (24.40/ 9.66)	........VTSRGQVGGESRRRRRWS
   70-   93 (39.01/19.50)	AAAAA..VVEARGQSGGEKNAATDAA
  187-  212 (36.36/17.72)	AAAAAsgVAGQHGHGGVDTRFPEDGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.89|      18|      35|     127|     146|       2
---------------------------------------------------------------------------
  127-  146 (25.48/16.42)	LVDEATGASSSSSAalAAPG
  165-  182 (32.41/15.81)	LVIELQHGAGGASA..AGPG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05389 with Med32 domain of Kingdom Viridiplantae
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