<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05389

Description Os10g0548400 protein (Fragment)
SequenceSGPRICGPRGIFFFLTLLVWEFDTVTSRGQVGGESRRRRRWSVSGRSRRRRGEMEATVDELSEAYQEFVAAAAAVVEARGQSGGEKNAATDAALEAFKQRWELFRVACDHAEELVESIRQRIGSECLVDEATGASSSSSAALAAPGIKPISAVRLEQMSKAVRWLVIELQHGAGGASAAGPGGGGGAAAAASGVAGQHGHGGVDTRFPEDGAQ
Length213
PositionTail
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.06
Grand average of hydropathy-0.262
Instability index63.03
Isoelectric point6.44
Molecular weight22294.54
Publications
PubMed=16100779
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
cold acclimation	GO:0009631	IEA:InterPro
leaf senescence	GO:0010150	IEA:InterPro
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
root development	GO:0048364	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05389
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.77|      24|     114|      70|      93|       1
---------------------------------------------------------------------------
   25-   42 (24.40/ 9.66)	........VTSRGQVGGESRRRRRWS
   70-   93 (39.01/19.50)	AAAAA..VVEARGQSGGEKNAATDAA
  187-  212 (36.36/17.72)	AAAAAsgVAGQHGHGGVDTRFPEDGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.89|      18|      35|     127|     146|       2
---------------------------------------------------------------------------
  127-  146 (25.48/16.42)	LVDEATGASSSSSAalAAPG
  165-  182 (32.41/15.81)	LVIELQHGAGGASA..AGPG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05389 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASAAGPGGGGGAAAAASGVAGQHGHGGVDTRFPEDGAQ
176
213










Molecular Recognition Features






MoRF SequenceStartStop




1) AAAAASGVAGQHGH
2) VDTRFPE
187
203
200
209