<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05386

Description Os10g0498700 protein (Fragment)
SequenceVWSTRVNKSIPPSEDLKNPQSYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFEQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDADFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIGPDKMTVDPALLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGNSRNMVTSPTNSSPSPSTNQGNQGGVASTTGSSQMQEWVQGAIAKISNNTDGAANAAPNPISGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRIPANAQKSSDSSMQKQHLMNSKTEDNTLAVRSGLGAAKLEDGTTSRGQMVGAKGAEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPSSQVGSSNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNTRQLKINGSTNRHLSDMEEDGDSSFGIQNLWPRKRRLSERDAAFGLKTSVGLGSFLGVMGSRRDVITAVWKTGLEGEWYKCIRCLRQTCAFAQPGALAPNTSNELEAWWISRWTHACPMCGGTWVKVV
Length756
PositionTail
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.06
Grand average of hydropathy-0.240
Instability index44.05
Isoelectric point7.31
Molecular weight82172.18
Publications
PubMed=16100779
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05386
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     264.02|      88|     114|     302|     404|       1
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  302-  404 (125.58/109.69)	HFITRLRRYASFC...RTLASHAVGA.....SSGSGNSRNMVTSPTNsspspstnQgNQGGVASTTGSSQMQEwvqGAIAKisNNTDGAANAAPNPISGRSSFMPiSINTG
  419-  514 (138.44/82.60)	HFLHRLCQLLLFCllfRRRQSPRIPAnaqksSDSSMQKQHLMNSKTE........D.NTLAVRSGLGAAKLED...GTTSR..GQMVGAKGAEENPVGNKSARIG.SGNAG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.02|      38|      41|     613|     650|       2
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  613-  650 (69.56/43.69)	FG..GPWSEPDDLGPLDNTRQLKINGSTNRHLSDMEEDGD
  653-  692 (61.46/37.73)	FGiqNLWPRKRRLSERDAAFGLKTSVGLGSFLGVMGSRRD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     242.43|      77|     488|      28|     106|       3
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   28-  106 (129.62/86.53)	TSDE.RSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAH...GG.....EVAVAFLrgGVHIFSGPNFEQVDSYHVNVGS.AIAPPA
  518-  604 (112.81/69.13)	TSDEvKVLFLILVDLCKRTATLQHPLPSSQVGSSNIIIRLHyidGNytvlpEVVEASL..GPHMQNMPRPRGADAAGLLLRElELQPPA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.04|      48|     576|     114|     169|       4
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  114-  169 (71.70/61.83)	LASVWHDTLKDRtILKIIRVLPPAILNAQTKVSSAVWERAIADrfWWsllagVDWW
  694-  741 (91.35/55.09)	ITAVWKTGLEGE.WYKCIRCLRQTCAFAQPGALAPNTSNELEA..WW.....ISRW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05386 with Med16 domain of Kingdom Viridiplantae
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