<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05382

Description Os07g0648300 protein (Fragment)
SequenceRLLARPDAAPLYSELVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQVWKPWGWASLLSDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKANPHNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIARNGTKQSGLVPSGTEAASNKSSSRKGIRGGSPNIGRRAPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAILGLLSARIIYEDADLPLPPTNTTVLRRDVDSLLEPPLDVLLDRPGESLFERLICVFHALLGNGKPSWLKSKSVSKSTTRTPRDFPAFDSEAAEGLQSALDHLEMPGIIRRRIQAAMPVLPPSRHPCISCQPPQLSLAALSPLQSGTSTSGPQQKGNSTSWVPTNVSIRNKAAFATQDPEMEVDPWTLLEDGTSCPSMSSGSNSSSGMAGDHGNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length498
PositionKinase
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.04
Grand average of hydropathy-0.304
Instability index56.81
Isoelectric point9.37
Molecular weight54102.20
Publications
PubMed=16100779
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05382
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.42|      27|      58|     399|     425|       1
---------------------------------------------------------------------------
  399-  425 (50.29/30.76)	LQSGT.STSG.PQQKGN..STSWVPTNVSIR
  454-  484 (37.13/20.77)	MSSGSnSSSGmAGDHGNlkACSWLKGAVRVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.18|      41|      58|      75|     115|       3
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   75-  115 (64.72/45.58)	LSDVIASKSTKRKLEVTSIEEGEVVDDSADAKRPSKANPHN
  135-  175 (67.45/47.80)	LSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIARN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.34|      28|      59|     290|     323|       5
---------------------------------------------------------------------------
  290-  323 (36.38/41.96)	LEPPLDvLLDRPGesLFERLIcvfHALLGNGKPS
  352-  379 (50.96/32.85)	LQSALD.HLEMPG..IIRRRI...QAAMPVLPPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05382 with Med12 domain of Kingdom Viridiplantae
Unable to open file!