<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05381

Description Os07g0648266 protein
SequenceMFFFFIVVFRRQQQLAPYKLKCDKEPLNNKLGPPDYYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSQIPYFCKTDIVVKCKEALKKRLRAINDSRAQKRKAGQVYGVPLFGSLLIKPGVYPEQRPCNEDTRRKWAEALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSTSVSTSAGGSDNHRSNQWTNDVVEYLQQLLDEFCLKEVPPSFREQSSPGLIAGVTQVKMKSEAPPAVGDIDEPLVHFKWWYMVRLIQWHLAEELLVPSVLIEWLFNQFQERVAVEALELLMPVALGMIDIITLSQTYVRMFVEILVRRLSDGPVVDNPKRAHISSVIAEVLRYMVLAVPDTFVSLDCFPLPSFVVPDVYSRGALLKITAGGGIAGSKRQDGYRYLSCGYAVCSIQKRSYDLATVANPNFQARGAAKVVQALDKALVTGNLTMAYLSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVESSLICSVFFLCEWATCDYRDCRTSLLRNVKFTGRRDLSQVHLAVSILKNKMDEINNLSRSKSSSRIAVNNTAKGSSLNNTSLAATVSDSSGLRNNAKSVDEKDKKDIFESPGPLHDIIVCWLDQHEVNSAVGFKRVDVLIIELIRSGIFYPQAYVRQLIISGITDKNDTLLDVERKRRHRRILKQLPGSSLFEILEEDRITEEQHLYEMMSTYSSERRLVLSELSTGQAFDANSRGEYASSSCVPKASDLFLASGGDKHGRVPEQVEDVKALVSSMLRFINPHSVEEEHCQIKTNPQGSSASTVTQIDTVDVKHDCEDCARTKRQKLDERASPLQGFPLIQSDEEDIWWVRKGTKLHESLKAEPAQKPIKQNSRGRAKVVRKTQSLAQLASSRIEGSQGASTSHLCESKVGCSHHKPSIDVDNVKDVDHMKIVDLSEVGKSLKRLRLLERRSVSVWLLKSVRQLIEVNEMAASKASNSVSSFSSQSDDKTLLKWRLGDEELLSILYILDICCDLVSGARFLVWLLTKVRGGMATSGQTGRSATHIKNRENQVCQIGEALVFSSLLRYVAFDVTSLQMSRAMIDLNKWVSWQMIMKILVTRELCFPIPFSSLSALMSQCKMCCRFFHDVSCVFLIPEKRKTLCLSCPCT
Length1155
PositionKinase
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.07
Grand average of hydropathy-0.223
Instability index51.06
Isoelectric point8.75
Molecular weight130309.58
Publications
PubMed=16100779
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05381
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.89|      45|     143|     667|     736|       1
---------------------------------------------------------------------------
  667-  712 (69.44/77.51)	ISGITDKNDTLLDVERKRRHRRILKQLPG.....SSLFEILEEDRItEEQH
  747-  796 (71.46/34.02)	SSSCVPKASDLFLASGGDKHGRVPEQVEDvkalvSSMLRFINPHSV.EEEH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     176.13|      58|     325|     570|     646|       2
---------------------------------------------------------------------------
  570-  646 (75.73/84.68)	SSRIAVNNTAKGSSLNNTSLAATVSDSSGLRNNAKSVDekdkkdifespgplHDIIVcwlDQHEVNSAvgFKRVDVL
  898-  955 (100.40/61.51)	SSRIEGSQGASTSHLCESKVGCSHHKPSIDVDNVKDVD..............HMKIV...DLSEVGKS..LKRLRLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.06|      32|      56|      74|     107|       3
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   74-  107 (51.49/43.74)	QIPyfCKTDIVVKCKEAL...KKRLRAIND..SRAQKRK
  130-  166 (50.57/34.68)	QRP..CNEDTRRKWAEALsqpNKRLRSLSEhvPHGYRRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     243.22|      81|     210|     267|     360|       5
---------------------------------------------------------------------------
  267-  360 (124.68/116.78)	DIDEPLVHFKWWYMV.....RLIQW.HLAEELLVPSV..LIEWLFNQFQE.RVAvealeLLMPVAL.GMIDiitLSQtyVRMFVEILVRRLSDgpvVDNPKRAH
  478-  568 (118.55/79.46)	DLSDALMEERWIKEVspclqSSLMWiGTVESSLICSVffLCEWATCDYRDcRTS.....LLRNVKFtGRRD...LSQ..VHLAVSILKNKMDE...INNLSRSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.80|      14|      65|     962|     980|       8
---------------------------------------------------------------------------
  962-  980 (20.51/27.12)	VWLLKSVRqlievNEMAAS
 1029- 1042 (27.29/19.67)	VWLLTKVR.....GGMATS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05381 with Med12 domain of Kingdom Viridiplantae
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