<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05369

Description Os02g0822900 protein
SequenceMEAAAGAGGAIGGSGREAAAEEEDGGEQWLEEEAEAEAVYCAVGKEAVKEWKANLMWVLAAFPWRRRRSRIVLIHVHRPPSRVNMMGAWVPVSQLAEEEVNAYRQLEEERISKVLDDLLDICKSQKVNASKIIFSCDDIARGLLQLVDDHGITDLVMGAASDKAYSRKMRAPRSKKARKVQLKASPSCKIWFVCKGNLICTREVNEGLNRTGSSTTSTTPRSSTSDYSRSRSSPRVHSLSSEQFGMQDPAEPTTSSVDQTPIREDNAMDRGTEGFNHEAVAVASSSTVPVSENVEAVQRSAAAVVQSLQEIEEDSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEETRRRQKVERDLADATRIANEAESSQQREARHRKEVEERLARERAAMEQDRRELDDILEQTREVDARAAELELQITSSERMMRDLEAKLSESYDLLHQLRRERRRDDVPAEAMAGSEAGDQRLTFLRLGLPELEEATNHFDESVRIGGGDGSRGSVYRGDLRSMAVAVKMIGRDVAVDEVGFCREVEAVGRARHPNLVTLVGACPEARAVVHEFVPGGSLEDRLAGAAPALPWHELCGVAHRACSALAFLHSTQPRATVHGDVRPANILLGEECCSSKLAGLGMCRLVRSSGGVALSRPAVGYVDPRHLATGEMTPERDVYALGVVLLRLVTGKPPLMAKQEAREAAGGSKAWHEVFDASSGGWPLEVAREVALVGLKCCDVEEEPAGARRPGELLEEACGVLEAAMSAAPGRSWSSVSSSSDGGEGGAPSYFVCPILKEVMRDPQIAGDGFSYEAEAIREWLRSGRDTSPMTNLKLPRRELVPNHPLRDAIHHWRLRRAMRTNFTTGLDSYYY
Length866
PositionTail
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.05
Grand average of hydropathy-0.480
Instability index57.60
Isoelectric point5.43
Molecular weight94936.40
Publications
PubMed=16100779
PubMed=24280374

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05369
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     246.64|      78|      99|     460|     542|       1
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  460-  542 (118.94/64.42)	VPAEAMAGSEAGDqRLTFLRLGLP..ELEEATNHFDESVRIGGGDGSRGSVYrGDLRSMAVavkMIGRDVA...VDEVGFCREVEAVG
  562-  644 (127.70/57.66)	VVHEFVPGGSLED.RLAGAAPALPwhELCGVAHRACSALAFLHSTQPRATVH.GDVRPANI...LLGEECCsskLAGLGMCRLVRSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     270.18|      59|      69|     206|     264|       2
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  161-  195 (33.84/13.43)	.....................SDkaYSRKMRAPR.....SKKARKVQLKASP...SCKIWFVCK
  206-  264 (95.21/50.38)	EGLNR..TGSSTTSTTPRSSTSD..YSRSRSSPRV.HSLSSEQFGMQDPAEPTTSSVDQTPIRE
  273-  331 (72.00/36.40)	EGFNHeaVAVASSSTVPVSENVE..AVQRSAAAVV.QSL..QEIEEDSPTPSGHGSEDAGDVSD
  358-  415 (69.14/34.68)	QKVER..DLADATRIANEAESSQ..QREARHRKEVeERLARERAAMEQDRRELDDILEQT..RE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.74|      32|      34|     728|     759|       3
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  697-  722 (25.44/ 9.29)	........EAAGGSKAWHEVFDASSGgwPLEVAR
  728-  759 (54.33/28.06)	GLKCCDVEEEPAGARRPGELLEEACG..VLEAAM
  764-  794 (50.97/25.87)	GRSWSSVSSSSDGG.EGGAPSYFVCP..ILKEVM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.71|      14|      74|      20|      33|       5
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   20-   33 (26.42/15.74)	AEEEDGGEQWLEEE
   96-  109 (24.29/13.87)	AEEEVNAYRQLEEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05369 with Med32 domain of Kingdom Viridiplantae
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