<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05368

Description Os02g0732700 protein (Fragment)
SequenceISMIKVKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITMKTRGIAEVEHIIHLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPTYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHQIQDLLSKAITNLAFFIWTHELLPLDILLLALIDRDDDPYALRLVINLLERPELQQRIKAFCTSRSPEHWLKNQPPKRVELQKALGNHLSGKERYPPFFDDIAARLLLVIPLIIYRLIENDATDIADRVLAVYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLASSNSSICPPPEYFANLLFGLVNNVIPPLSCKSKSNPSDAAGSTARTTYNKPYTSSAGGISNSDGQRAFYQNQDPGSYTQLVLETAAIEILSLCVPASQIVSSLVQIIAHVQAMLIQSNSGHGMSGGLGQNSGVPTSSGGGVEPVGANRPNTTASGINASNFVSRSGYSCQQLSVLMIQACGLLLAQLPPEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPHEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPPVEASEIADIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVMEILRPDVQHLLSHLKTDPNSSVYAATHPKLVQNPS
Length803
PositionTail
OrganismOryza sativa subsp. japonica (Rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza> Oryza sativa.
Aromaticity0.08
Grand average of hydropathy0.034
Instability index42.13
Isoelectric point7.74
Molecular weight89356.20
Publications
PubMed=16100779
PubMed=24280374

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05368
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      65.87|      22|     197|      77|      99|       1
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   76-   90 (11.86/ 9.22)	........P.LLEQIMATSQHTwS
   91-  105 (20.17/ 8.99)	EKTLRYFPP.LIRDFL........
  280-  302 (33.84/20.89)	EHWLKNQPPkRVELQKALGNHL.S
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.84|      14|      83|     450|     465|       4
---------------------------------------------------------------------------
  448-  462 (21.38/16.68)	NKPYTsSAGGISNSD
  546-  559 (24.46/ 9.21)	NRPNT.TASGINASN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.09|      15|      15|     394|     408|       5
---------------------------------------------------------------------------
  394-  408 (28.13/19.85)	FAQYLASSNSSICPP
  412-  426 (26.97/18.69)	FANLLFGLVNNVIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     100.43|      20|      23|     679|     698|       8
---------------------------------------------------------------------------
  337-  353 (23.17/ 8.84)	..IAD..RVLAVYSTFLAF.HP
  354-  373 (24.14/ 9.46)	LRFTFvrDILAYFYGHL..PSK
  376-  390 (19.25/ 6.33)	VRI.L..NVLG.VSTKTPF...
  679-  698 (33.87/15.69)	LRIAF..RILGPLLPRLAFARP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.72|      33|     279|     486|     518|      12
---------------------------------------------------------------------------
  486-  518 (54.60/42.68)	IEILSLCVPASQIVSSLVQ.IIAHVQA............MLIQSNS
  758-  803 (43.11/31.98)	LEILTLCGKVMEILRPDVQhLLSHLKTdpnssvyaathpKLVQNPS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05368 with Med23 domain of Kingdom Viridiplantae
Unable to open file!