<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05349

Description Uncharacterized protein
SequenceMSSPQEAFKQKFTTVFSDYMGSSKVQAHFASYVKHCSPLEERCKVKAAADSLFEAFHALPAESLESAFTDVVNRRSMSAAANLLVNNFIGRVLEERLLPVKTMCIILLRSPSLTVNNYYVWRDTFQFLLENVSTLDYKSVRDVFKLVTELPIPVHLQSDQRKAVEISEKVTAHICSRETNLLPAYLMITEIRKSYSEMRCFSHWRVADVFTELVESFRPLAQMNSINGRSHLTPVVGHVGLYFNAFWRLEPQTLRFPLKGCLPFSQNLMQPQYHLVYQVFMHATYRDAMSTLFSLQKQDKIHLPFLEEVIAAIILELMYEAECDHSQLNPDAWRLISTQIVCLCMQMFISFTRLVNNLHKKLSSLPYRFARNQLMWCLFNFVSFGVQQKEEFLAVLDLYRLLYSGNDTFIMSGSDSSCVLKMAATCIWIHAMQKLPSGEIKIPPTINTQMKFLQEALKKKGRFSIDNYVLAVLCNAYSSTSDLFHQELLPCLIEHLDSHNLCGQAPLMTGPSPAVPTVMLPGGAVADNRVRPLKFEFMDCLSVHVRASITRSAFGGFMRFMQNKGSVCPSPALVESYCRLLSYGDAEMLGLKQFVSNLVVAATKQQCLSTIHIICEITSYRLSYIPVLYRVHLLCSIHVAINSAVLQQNATVYWMLENTLLRSIHWFPYCEVFQPSFSRLLSMLIANAGEGARPQEGGDETLKAVILVLARSSAIANSDFNIKDGIYRDILAKVPAYMWPQSTLQFFPQPLCAFYGHQQGMAPTPHNYMLLRQQVEEEYIKHRTFGADLSIIDYFVNTSTNTVYLCLLWRLVYETGELPSVSMKILEALGPRRVLIHLQTLADFLVYETLHGDVNRCVDVLNRMIFKYAVIPLERFVLTMIFRHYEGNEAFYAMLIVMLLIQRSEEFKSAVNDCVATLPADANLCQDGYEKHVIYHHKHPEKTWAQVFAEMNRTTPASASDSIVPVYYSNCCLRMLPILDMMFHRMIEIPTVCSKFLDATVSIVGPLYRFHPFPISFLYTTFRFYEKRLNESPQTKLKLAYAMHLAFQNIRDEQWLLSSELIAYCSSLTDAAMGSSSSFDGGQPKWAPDMQYFAKLVKRLVDTFAQPRRHGCKRNELRFCEFSNAQAHILHCVCVELMALPCGAAEVGHALINLLLCWHPMVDKYVVHYWLNALGLILTALPVPYVEPMYQAIVNLLASKELECIKDNISAKLDFEHQWLLMCDLYPARLLALAHAVWCHSTSGGLQLLVQAVKTSWKLQVKTETQFLYICHLIAPLLLRLSQERSLFCFDVGIAVYEMLYNVDKQVAELRYEDLISDFLYHIKYMFLGDCVRQEADRVISQLRPSLQRKLRYISFAQPDQSNAASTSQ
Length1369
PositionTail
OrganismTrichuris muris (Mouse whipworm)
KingdomMetazoa
Lineage
Aromaticity0.11
Grand average of hydropathy0.092
Instability index47.34
Isoelectric point7.50
Molecular weight156528.58
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05349
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.22|      36|      40|    1116|    1155|       1
---------------------------------------------------------------------------
 1120- 1155 (65.34/47.32)	CEFSNAQAHILH....CVCVELMALPCGAAE.VGHALINLL
 1157- 1197 (55.88/30.23)	CWHPMVDKYVVHywlnALGLILTALPVPYVEpMYQAIVNLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.49|      16|     126|     115|     130|       2
---------------------------------------------------------------------------
  115-  130 (32.76/20.53)	VNNYY..VWR...DTFQFLLE
  239-  259 (20.73/10.20)	VGLYFnaFWRlepQTLRFPLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.75|      28|      31|     339|     369|       3
---------------------------------------------------------------------------
  339-  369 (42.29/36.94)	QIVcLCMQMFISFTrlVNNLHKKLSSLP.YRF
  373-  401 (47.46/28.81)	QLM.WCLFNFVSFG..VQQKEEFLAVLDlYRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.33|      32|     459|     782|     814|       5
---------------------------------------------------------------------------
  782-  814 (56.03/43.70)	HRTFGAdLSIIDYFVNTS........TNTVYLC.....LLWRLVYE
 1240- 1284 (43.29/27.88)	HSTSGG.LQLLVQAVKTSwklqvkteTQFLYIChliapLLLRLSQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.78|      24|     459|     536|     602|       6
---------------------------------------------------------------------------
  511-  534 (42.53/71.04)	PSPAVPTVMLPGGAVADNRVRPLK
  569-  592 (42.25/23.99)	PSPALVESYCRLLSYGDAEMLGLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.61|      32|     459|     203|     237|       7
---------------------------------------------------------------------------
  203-  237 (53.93/45.82)	HW.RVADVFTelvESFRPLAQMNSINGRSHLTPVVG
  665-  697 (56.68/39.79)	HWfPYCEVFQ...PSFSRLLSMLIANAGEGARPQEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.84|      25|      38|     959|     988|       8
---------------------------------------------------------------------------
  959-  988 (37.83/35.08)	ASDSIV.PVYYsnccLRMLPI..LDMMFhRMIE
  999- 1026 (40.01/20.85)	ATVSIVgPLYR....FHPFPIsfLYTTF.RFYE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.82|      13|     223|     417|     429|      10
---------------------------------------------------------------------------
  417-  429 (26.05/14.93)	SCVLKMAATCIWI
  643-  655 (24.77/13.87)	SAVLQQNATVYWM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05349 with Med23 domain of Kingdom Metazoa
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