<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05348

Description Uncharacterized protein
SequenceMHQVGAVSCEQAERRFPVDSVDEYWLFIGVELPREIPSSHYNNGVLTEMSTAGNQVDRFVRSAWRERWSVMKFCINLNSIRQEVDADKGKRLAALLMRYATMDEYGIEWIFQYMENCVATGVISSIALFEVIVSYDQLSKSSCLKYVLNLATHCANASGLRIDGEEDSAQLSIAMLKLFGWLLGIFRYSMERSVESKLPTMVSGCVLTLAKSGFVKGLVKLAAYEDPELFSTVTSLNSHLLQVAQSHENADLRLLIVKSLELIQHLLLAPLVEVSPKIVSDKSHWPSMMVSISIVFANTQHMTGIEDMVRAVLMSREIQDLRWTDIVRDLLHGAFLLIHDDTSILPPSVANSFLYLRLPRVLQKLCQAETPHDSLIGGLKGLAGIRSLLDASDLKARCNTLQFFLNVLVDMDMINEQEKAAIMQIRFESRAGVMEHYSPDSQPTINLVLKAEPTLLSILKVLNEENLQMPERLSQMLNPLMSGKGLLYIVAAASSTDQMALFAEKLIRINEHYRAASLVDNGGGEIFDLSFLLLHRLSQYHSTKFWLRPSDPFLQMWYFKSANQLVRGIHTQEDVDTLARLRDYDYMQIDETYSRLKRGHTAWMMVRTWDFVLSQIAPIGERIVHSVRKNSITSEELKHILTGLLRINVNGVQCMCGPLLCLAQYLALRGDEVAKMIAEKVSAFLDSAASIEMDRSKHITDRISFMANSARRFLMSFVAAEEQPLPPFNWFGIGRMLAKQFPTVSEDHFPLLSKPENIPYLLANSLRVGCVASALVSRVIVCTELGQYDVWISSLIEALHRICTPWGLRTWCDLSIALCFVDPSECAPRLVAYLDSSFPLTHRDLFCVGPRGCPLAFFLVQLYIIALRYTSPSMVATICKDTPRSADDLSRLNETTVVTLRRLYSRLDVCRGGALYPTANFVGAFLNQLACHSLPEAQIMKREIPLDMVMFVLWADPHLLKPETIVNLYNPQEQTQRHKIMHLFCVLHKVGML
Length993
PositionTail
OrganismTrichuris muris (Mouse whipworm)
KingdomMetazoa
Lineage
Aromaticity0.08
Grand average of hydropathy0.102
Instability index42.45
Isoelectric point6.35
Molecular weight112204.33
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05348
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     419.25|     108|     201|     496|     609|       1
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  496-  605 (185.87/135.14)	TDQMALFAEKLIRINEHYRAASLVDNGGGEIFDLSFLLLHRLSQYHSTKFWL..RPSD.P...FL.QMW.....YfkSANQLVRGI..HTQEDVDTLAR..................LRDYDYMQIDETYSRLK..RGHTAWMM
  700-  808 (132.76/88.07)	TDRISFMANSARRFLMSFVAAEEQPLPPFNWFGIGRMLAKQFPTVSEDHFPLlsKPENiP...YL.L...........ANSL.................rvgcvasalvsrvivcteLGQYD.VWISSLIEALH..RICTPWGL
  814-  912 (100.62/73.60)	...........LSIALCFVDPSECAPRLVAYLDSSFPLTHR......DLFCV..GPRGcPlafFLvQLYiialrY..TSPSMVATIckDTPRSADDLSR..................LNETTVVTLRRLYSRLDvcRG......
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.34|      36|      67|     246|     281|       4
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  246-  281 (57.94/37.13)	SHENADLRLL.IVKSLELIQHLLLAPLVEVSPKIVSD
  315-  351 (58.40/37.48)	SREIQDLRWTdIVRDLLHGAFLLIHDDTSILPPSVAN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.58|      32|     503|     436|     479|       8
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  436-  479 (50.43/47.89)	HYSPDSQ......P..TINLVLKAEPTLLSilkvlneenlqmPERLSQMLNP
  932-  971 (51.15/28.30)	HSLPEAQimkreiPldMVMFVLWADPHLLK............PETIVNLYNP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05348 with Med24 domain of Kingdom Metazoa
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