<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05346

Description Uncharacterized protein
SequenceMISMEHCTRAFRSGLQVVMEHVRQKSNNLLSWPEIMKEAKIVMMEKRTTMDAEDSRQVAMFYEKLRSNVPVMSTRDLVVRLEDISNRCRLRFLRSPGSSGNCFITSEYFFVEIVLGEDATAVQVFVTHGENQAAEECIALRNIINSRQWELLELNLKGLRDVYIENADRETKKAAFAFLKSLEAYLFRQNANTDSLRGSSVCNAFMAPFDYFVPREAGIPGRIYYFCSPSSLVLSVGERVEELTFSKMLASAGVRYAELLMESTAETQLLEIATNGSTEYQSLCTCAIFTLTFKQPLVVTLDALTKIEQFTGFAPETLRKGRMLNLLLSKDTSAPLKSLLSVVILSDQSHVYSFSDESCLIEAAEVKKIFWRNTESLANVMGFVRSMATFNHVVSTCLRNILDDGAAVKEEWRCVYTTFSTWSNSIDCVFEYTQGDFFTIKFLLFPQMRATVCLPSSLETTGKDLSAIATNVLSRFWSIPIAVRAVLKALLPSSVSEPLLSPPCNGKWSNSNGADDPPVNDSEHSDTQNFNVPSLSCLANNTMHMYTLNGKESGKVQLTAKERINRLSASADTVLAMAAPRVFSDSLPNMLNLFKQVTMWKELIPPRLIVRKVPPRPAKFVPAASPVHEHSPILAPPTPIVSAVCSQAAAGGAAAGPSPKNRHFSSTSETLTELDELCQLSSSFTEGGRSSVALNSPDGRVVDGPINAGDSSIQNTIECVVGSVKAAPSYAMGNVSFKHVPSEGTNLLASIRNLEFNVFGQRPYVGKSATDPGEQHDRQLAPSCAAEQGAPGPNAMGSWQSSQQQRDLCAVRGMLVTRGVRRRRSRKPLGNTSDRTMEMVLKELRKAERMARGAISRRPRKARRCATANVLMRSDAFAGPEETSKFTLKIRPTIGTAQVSSGVGDGVVSHGDNDQMPTLDVAAPSRLSTDDMLRKQLKAVAREVISDVQLTPLESTDFDSPSSGSLDLPADGGRYGTSVRGTEPGGRFSSTSELTKSSGACYATTGIKAPKRKNSLDAVIGKLMDKVGTSPSERRIDHDDNFGDVFGDPNLPYLKKSRLDSISDATDNANRPSSSDMAEAANEGIKLVIKKSVIKMGASSKSTSTRGKTGSPAKKSSPTMGHRAQSVSPPLLKTENTILDSTPGSSRSPSGSKFELLRQKMQARKLKKQPITEKAKTKSKKAEKRSVDYHTTDDQTERKMLEKPDAKLSPSQLPAVFPGTEGIIFSRSLKNFKIPKIEDTSAKVPVSAPSTSASNAGSTTTSVTSHSAAQVPSEGSSAERTFSAQPSEDFTSAACAPPTTKCIPRKPFPSMLHQPSPKPILRNHTHPHSIPPIAMSAMPPPPPPTPTRYRHGDNVEVSPSLPIPRYVRRTLLPNPPIPAPTNSPPPPTLQRPVAAALSQSVPMNQARTVVSPTPLLGNGGQAELAADTPDIPNLKVAIDVSKESAPDDLVQLVPSPDASALVIDDAPAASENVESLTDGSDVLSPGLQIAIEECVYKPTTTEKAIGDCDKVEGGAV
Length1516
PositionMiddle
OrganismTrichuris muris (Mouse whipworm)
KingdomMetazoa
Lineage
Aromaticity0.05
Grand average of hydropathy-0.327
Instability index51.00
Isoelectric point8.71
Molecular weight164221.90
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05346
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     135.35|      34|      41|    1305|    1345|       1
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  606-  638 (29.65/10.20)	................PR.LI...VRK.VPPR..PakfvPAASPVHE.hSPilAPPT
 1305- 1345 (62.74/51.88)	RkpfpsMLH....QPSPK.PI...LRNHTHPHsiP....PIAMSAMP..PP..PPPT
 1348- 1388 (42.96/20.99)	R.....YRHgdnvEVSPSlPIpryVRRTLLPN..P....PI..PA.PtnSP..PPPT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     177.15|      57|      85|     874|     940|       2
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  874-  940 (79.85/64.60)	SDAFAGPEETSKFTLKIRPTIGTAQVSSgVGDGVVSHGDNdqMPTLDVAAPSRlstddmlRKQLKAV
  963- 1019 (97.30/53.73)	SGSLDLPADGGRYGTSVRGTEPGGRFSS.TSELTKSSGAC..YATTGIKAPKR.......KNSLDAV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.55|      30|      39|    1233|    1263|       3
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 1233- 1263 (47.76/33.32)	KIPKiEDTSAKVPVSA.PS...TSASNAGSTTTSV
 1270- 1303 (46.79/27.78)	QVPS.EGSSAERTFSAqPSedfTSAACAPPTTKCI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.69|      10|      36|     818|     827|       5
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  818-  827 (18.64/11.55)	RGVRRRRSRK
  852-  861 (19.05/11.99)	RGAISRRPRK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.16|      18|      36|     645|     662|       6
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  645-  662 (33.97/18.64)	C...SQAAAGG..AAAGPSPKNR
  678-  700 (24.19/11.01)	CqlsSSFTEGGrsSVALNSPDGR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.20|      19|      36|     437|     457|      10
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  437-  457 (29.94/21.69)	FFTIKFLLFPQMRATvcLPSS
  476-  494 (33.26/17.26)	FWSIPIAVRAVLKAL..LPSS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.00|      23|      36|     498|     520|      12
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  498-  520 (45.36/25.39)	PLLSPPCNG..KWSNSNGADDPPVN
  533-  557 (36.64/19.12)	PSLSCLANNtmHMYTLNGKESGKVQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.04|      20|      25|     761|     780|      13
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  761-  780 (36.09/19.20)	QRPYVGKSATDP..GEQHDRQL
  787-  808 (29.94/14.65)	EQGAPGPNAMGSwqSSQQQRDL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.47|      36|      39|    1427|    1465|      17
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 1397- 1439 (57.18/29.19)	LS.QSVPMNQARTVVSP..TPLLGNG.....gqaelaaDTPDI..PNLKVAID
 1440- 1492 (38.29/26.27)	VSkESAPDDLVQLVPSPdaSALVIDDapaasenvesltDGSDVlsPGLQIAIE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05346 with Med1 domain of Kingdom Metazoa
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